Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq24 295 7e-75 seq1 120 3e-22 >seq24 Length=170883 Score = 295 bits (326), Expect = 7e-75 Identities = 426/601 (71%), Gaps = 0/601 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | || ||||||||||||||| | || | | ||||| ||| Sbjct 95428 TCATGCGAGTGTCCGTCGGAATCCACGGTGACGACATTGCCCGAGCCATCGAGACCTACA 95487 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| || ||||||||||| ||||| | || ||||| | ||||||||| || Sbjct 95488 ACTACATGTCTCAGAAGTACTTTACCCACGCTTCCCCCACCCTCTACAACGCTGGAACCC 95547 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || || ||||||||| || ||||| || |||||||| ||||| |||||||||| Sbjct 95548 CCCAGCCCCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCA 95607 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| ||||| | || ||||||| | || ||||||||| || Sbjct 95608 TCTACGATACCCTCAAGACCTGTGCTCTGATTTCCAAGTCTGCTGGCGGTATCGGTCTCT 95667 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| || | |||| | || || || ||||| | || | | Sbjct 95668 CCATCCACAACATCCGAGCCACCGGCTCCTACATTGCCGGCACCAACGGAACCTCCAACG 95727 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | |||||||| ||||| || |||| ||||||||| ||||| ||||| ||||||| || Sbjct 95728 GTATCGTGCCCATGCTGCGTGTCTACAACAACACTGCCCGATACGTGGACCAGGGAGGCA 95787 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||| ||||| ||||| ||||||| |||||| | |||| Sbjct 95788 ACAAGCGACCCGGAGCCTTTGCCATGTACCTTGAGCCCTGGCACGACGACATCTTCGAGT 95847 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | ||||||||| ||| || || | || ||||| || ||| |||||||| | Sbjct 95848 TCTGCGAGCTGCGAAAGAACCACGGAAAGGAGGAGATTCGAGCCCGAGACCTGTTCCTGG 95907 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | |||||||| || || || |||||| | || ||| || ||| |||||| || | Sbjct 95908 CCCTGTGGATCCCCGATCTGTTCATGGAGCGAGTCGAGCAGAACGCCGAGTGGACTCTCA 95967 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 ||||||| |||||||| ||||| || | | |||||||| || ||||| || || ||| Sbjct 95968 TGTGCCCCAACGAGTGTCCCGGTCTGGACGACGTCTACGGCGACGAGTTCAAGCAGCTGT 96027 Query 53793 A 53793 | Sbjct 96028 A 96028 Score = 149 bits (164), Expect = 7e-31 Identities = 302/445 (68%), Gaps = 5/445 (1%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||| ||||| || || || ||||| ||||| || || ||||||| | ||| | Sbjct 96705 CGAAACTCGCTGCTGGTTGCTCCCATGCCCACCGCCTCCACCTCTCAGATTCTCGGCTTC 96764 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| ||||||| ||| || || || || || ||| Sbjct 96765 AACGAGTGCTTCGAGCCCTACACCTCCAACATTTACTCTCGACGAGTGCTTGCTGGCGAG 96824 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || ||||| || ||||||||||| || | |||||| | Sbjct 96825 TTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTTGGTCTGTGGAATGAG 96884 Query 55664 CAGATCAAGA-CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCC 55719 || |||| | || || ||| || || ||||| ||||| | | || || Sbjct 96885 ACCATGAAGAACCGA-ATCGTGGCCGACAACGGATCCGTGCAGAACATCCCCAACATCCC 96943 Query 55720 TCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGA 55779 | | ||||||| | ||||| || |||||||||||| | |||||| | | || || Sbjct 96944 CCAGGAGATCAAGGACCTGTACCGAACCGTGTGGGAGATTTCGCAGAAGCGAATCATCGA 97003 Query 55780 CATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGA 55839 ||| ||| || || | | ||| |||||||||||||| || ||||| ||| | Sbjct 97004 GATGGCTGCCGACCGATCGCCCTTCATTGACCAGTCCCAGTCCCTCAACATTCACATCAA 97063 Query 55840 GAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAA 55899 | | || | ||| |||| | | ||| |||||||| ||||| ||||||||||| ||||| Sbjct 97064 GGACCCCACCATGGGCAAGCTCACCTCCATGCACTTCTACGGCTGGAAGAAGGGTCTCAA 97123 Query 55900 GACGGGTATGTACTATCTGCGGACC 55924 ||| ||||||||||| ||||| ||| Sbjct 97124 GACTGGTATGTACTACCTGCGAACC 97148 >seq1 Length=2434256 Score = 120 bits (132), Expect = 3e-22 Identities = 355/540 (66%), Gaps = 12/540 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||| | || || ||||||||||||| ||||| | | |||| || || ||| Sbjct 1214173 TCATGAGAGTGGCTCTGGGTATCCACGGCAACGACCTCCCTAAGGTCCTCGATACTTACC 1214114 Query 53253 ACTTAATGA-GC-CAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | || || ||||| | || || ||||| | |||||||||||||| || || || Sbjct 1214113 AGGCTCTGTCGCTCAAAA--AGTTCACACACGCTTCTCCAACCCTGTTCAATGCAGGCAC 1214056 Query 53311 GAATCACCCT---CAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGA 53367 || || ||| | ||| |||||| ||||| || |||| || ||||| ||||| Sbjct 1214055 ---TCCCCGGGGCCAGCTATCGTCCTGCTTTCTGGTCGCCATGAGCGAAGACTCCATCGA 1213999 Query 53368 CGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 |||||||||||| || ||||| ||| ||||| || || ||| | || || || || Sbjct 1213998 CGGCATCTACGACACTCTCAAAACGTGCGCCCAAATTTCAAAGACCGCAGGAGGCATAGG 1213939 Query 53428 TATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 | | || | ||| || | || || ||||| |||| || | | || | Sbjct 1213938 TCTGCATATCCACAACATCAGAGCTAAGGGCACCATCATCACAGGCTCTCAGGGAAAATC 1213879 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | || || || || |||||||| || ||||| ||||| ||| | ||||| |||| || Sbjct 1213878 CTCAGGCATTGTTCCCATGCTCCGAGTGTTCAATAACACAGCCAGATACGTGGACCAAGG 1213819 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 || ||||| || |||| || ||||| | ||||| ||||| || || ||| | Sbjct 1213818 CGGCAACAAGCGTCCTGGAGCGTTTGCAGTCTACTTGGAGCCATGGCATGCGGATATTTT 1213759 Query 53608 GGAGTTTCTCG-AGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGT 53666 ||| ||||| | | ||||| || || || | ||| || | | ||||| || | Sbjct 1213758 GGA-TTTCTTGAATCTGCGCAAAAACCACGGAGCCGAGGAAAACAGAGCACGTGATCTCT 1213700 Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 || || | ||| |||| || || |||||| | | || || | | |||| | |||| Sbjct 1213699 TTTACGCATTATGGGTTCCCGATCTGTTCATGAAGAGAGTCGAAAGAGGCGAGAAATGGT 1213640 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||| |||| ||||| || ||||| || ||||| || ||||||| ||||| || Sbjct 1212878 CGAAACTCGTTGCTAGTGGCTCCTATGCCTACAGCGTCCACTTCTCAGATTCTGGGCCAC 1212819 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| || |||||||||||| ||||||| |||||||| || || ||||| ||| Sbjct 1212818 AACGAGTGTTTTGAGCCGTACACGTCCAACATTTACCTGCGTCGAGTCCAGGCAGGCGAG 1212759 Query 55604 TTTGTCATGATCAAC 55618 ||| | |||||||| Sbjct 1212758 TTTCTGGTGATCAAC 1212744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215699031200