Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq24 262 4e-65 seq14 192 7e-44 seq4 190 2e-43 seq3 187 3e-42 seq1 93.3 5e-14 >seq24 Length=170883 Score = 262 bits (290), Expect = 4e-65 Identities = 1122/1749 (64%), Gaps = 53/1749 (3%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| || Sbjct 97147 GTTCGCAGGTAGTACATACCAGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAG 97088 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||||||| | | ||||||| || ||| ||||| || ||||| ||||| ||| Sbjct 97087 GTGAGCTTGCCCATGGTGGGGTCCTTGATGTGAATGTTGAGGGACTGGGACTGGTCAATG 97028 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 || | | || || || ||||| || || ||| ||| || | ||| ||||| || || Sbjct 97027 AAGGGCGATCGGTCGGCAGCCATCTCGATGATTCGCTTCTGCGAAATCTCCCACACGGTT 96968 Query 80218 CGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGA---TTTTGCACACTGCCACCG 80271 || |||| |||| | ||||| || |||| | || ||||| || | Sbjct 96967 CGGTACAGGTCCTTG---ATCTCCTGGGGGATGTTGGGGATGTTCTGCACGGATCCGTTG 96911 Query 80272 TCCTTTACAATTTGATTTTTCAAT-TCAGACGTCCAGACACCAAGCTTGTGCAGATCTTT 80330 || || ||| | || |||| || | |||| | ||||| || ||| || || Sbjct 96910 TCGGCCACGATTCGGTTCTTCATGGTCTCAT-TCCACAGACCAACCTCAACCAGGTCCTT 96852 Query 80331 CACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-TACA 80386 | || | | ||| |||| || |||| || || || || || ||| || | Sbjct 96851 GAGCAGCCAGGGGTTGACAATCTGGA---ACTCGCCAGCAAGCACTCGTCG-AGAGTAAA 96796 Query 80387 GGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCG 80446 ||| | ||||| ||||| || ||||||| ||||| ||||||| ||| || | Sbjct 96795 TGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGAGAGGTGGAGGCGG 96736 Query 80447 TCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCA 80506 | ||||| || | |||| ||| || || |||| ||| |||| |||||| | | Sbjct 96735 TGGGCATGGGAGCAACCAGCAGCGAGTTTCGCATACCGGTCTTCATGATATTGGCCTTAA 96676 Query 80507 AATCTGACCAAAAATCAA--CCCCAACGCTGTGACC--CCACATGTCGTGCTGCAAGATG 80562 ||| | || | ||| | | | | || || ||||| ||| ||| | | Sbjct 96675 GATC-GTCCCACTCCCAAAGCTCGGAGGGAGTCACGTTCCACAGGTCAAACTGAAGGTCT 96617 Query 80563 CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG-GCCAGCTC 80621 ||| || || ||||| ||| ||| |||||||| | || ||| || | |||| ||| Sbjct 96616 CCCCTGGAGGCAGGAGAGCCCTGGAAGGTCTCGTAGGCACCGTCC-TCAAGAGCCATCTC 96558 Query 80622 ACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA-CACCGC 80680 | || || | ||| |||| || ||| ||| |||| |||| | | | Sbjct 96557 GTAAGAGGCCTCGACGGCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTT 96498 Query 80681 GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAA 80740 | |||| | || || | | | || |||||| ||| ||||| ||||||| Sbjct 96497 G-GCCTCGGCAGACTCAAAGGGAAGTCGCAGAGCCATGAAGGTGTCGGCCAGACCCTGAA 96439 Query 80741 CGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAA 80800 | || | || || || || || ||| |||| || || ||||| |||| ||||| Sbjct 96438 CACCCAGAGCAATAGGTCGATGTCGCATGTTGGACTTCTTTGCCTCGGGAACGGGGTAGT 96379 Query 80801 AGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTT 80860 |||| ||||| | | ||| ||||| || || || | | ||| || || | Sbjct 96378 AGTTTCGGTCGATAATGGCGTTGAGGTTTCGCACAATGACTTTGGCGATATCGTGCAGCT 96319 Query 80861 TCTGAAAGTCGAA-------TTGGT-TCCCCT----TCACAAATGCCGGAAGGCTCAGGG 80908 ||| |||||| | ||||| || || | ||||| | || ||| | || Sbjct 96318 TCTTGAAGTCGTAGAAGGAGTTGGTGTCGTCTCGAGTGACAAAGGTGGGCAGGGCAATGG 96259 Query 80909 ACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACA 80968 | ||||| ||||| || |||||||| || | | | ||||||| || || ||||| Sbjct 96258 AGGCCAGGTTGCAAACAGCCACCTCATCGGGAGAAGAGTACTCGACAATCTCGCAGCACA 96199 Query 80969 AATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCT 81028 || |||||||| || || || ||||| |||||||| ||||| ||||||||| |||| Sbjct 96198 GGTTGGAAGACTTGATGGTTCCGAGGTTCTTCTGGTTGGACTTTCGGTTGCAAGCATCCT 96139 Query 81029 TGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCT 81088 ||||| |||| | ||| |||||| |||| ||| | | ||| ||| || ||| | || Sbjct 96138 TGTAGAGCATGAAGGGGTTACCGGACTCGGTCTGGCAGTCGAGAATGTGGTACCACAGCT 96079 Query 81089 CGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCG 81147 | || || || | ||| || | | |||| |||| |||| | Sbjct 96078 TCTGGGCGGGGATGGTTCGTCGACCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCT 96019 Query 81148 TCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGC 81207 | ||||| | | |||| | || || | || |||||||| |||||||| || | Sbjct 96018 T-GAACTCGTCGCCGTAGACGTCGTCCAGACCGGGACACTCGTTGGGGCACATGAGAGTC 95960 Query 81208 CAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAAC 81267 || |||| || | ||| || || |||||| || |||||||| ||||| |||| Sbjct 95959 CACTCGGCGTTCTGCTCGACTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAAC 95900 Query 81268 AGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATG 81327 ||||| ||| || |||||| | || ||||| |||| |||| || || | | Sbjct 95899 AGGTCTCGGGCTCGAATCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAG 95840 Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------GCCA 81381 ||||| | ||||| ||||| || |||| ||| | | || | | || ||| Sbjct 95839 ATGTCGTCGTGCCAGGGCTCAAGGTACATGGCAAAGGCTCC---GGGTCGCTTGTTGCCT 95783 Query 81382 CCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCT 81441 ||||||| ||||| |||||||| ||| | ||||||| ||| || | |||||| | Sbjct 95782 CCCTGGTCCACGTATCGGGCAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTG 95723 Query 81442 GACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGA 81501 || ||||| || || | || || || |||| || | ||| ||| || ||| Sbjct 95722 GAGGTTCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCTCGGATGTTGTGGATGGAGAGA 95663 Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 ||||| || || | |||| |||||| ||||||| || | ||| || || || || Sbjct 95662 CCGATACCGCCAGCAGACTTGGAAATCAGAGCACAGGTCTTGAGGGTATCGTAGATGCCG 95603 Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 |||||| || | ||||||| | | |||||| |||||||| ||||| | Sbjct 95602 TCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTG-GGGCTGGGGGGT 95544 Query 81622 -CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATA 81680 || || ||| | || || |||| ||||| | || || | ||||| || || Sbjct 95543 TCCAGCGTTGTAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTCTGAGACATGTAGTTGTA 95484 Query 81681 GGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACAT 81740 ||| || || | || | ||| ||||||||||| || |||| | || ||||| | ||| Sbjct 95483 GGTCTCGATGGCTCGGGCAATGTCGTCACCGTGGATTCCGACGGACACTCGCATGATCAT 95424 Query 81741 GTACTGGGG 81749 | |||||| Sbjct 95423 CTGCTGGGG 95415 >seq14 Length=605277 Score = 192 bits (212), Expect = 7e-44 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || ||||| ||||||||||| Sbjct 299935 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCC 299876 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| |||| ||||||||||||||||||||||| || |||||| Sbjct 299875 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 299816 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||||||||| ||||| || ||||| | || ||||| | ||||| || Sbjct 299815 CAGCGACTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAAC 299756 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| |||||||| ||||| || Sbjct 299755 ATCCAGAAGGAGTCCACTCTCCATCTGGT 299727 Score = 140 bits (154), Expect = 4e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27439 ACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAG 27498 || ||||| |||||||| ||||| ||| | ||| | || | ||| | || |||||| Sbjct 298956 ACCATTACCCTTGAGGTCGAGTCTTCTGACACCATCGACAACGTCAAGTCCAAGATTCAG 298897 Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || ||||||||||| || || || || |||||||| || ||| Sbjct 298896 GACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTGGAG 298837 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | ||| ||||| | ||||| || |||| |||||||||||||| || || || | Sbjct 298836 GACGGTCGAACCCTTTCCGACTACAACATCCAGAAGGAATCCACTCTCCACCTTGTGCTC 298777 Query 27619 CGTCTTCGCGGTGGACA 27635 || || || ||||| || Sbjct 298776 CGACTCCGAGGTGGCCA 298760 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| | || || |||||||||||||| ||||| || ||||||||||| || ||||| ||| Sbjct 300085 AAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGACTGATTTTCGCT 300026 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || ||||||| ||| || || | || || || |||| ||||| || || Sbjct 300025 GGAAAGCAGCTTGAGGATGGTCGAACTCTCTCTGATTACAACATCCAGAAGGAGTCTACC 299966 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| || | || ||||| ||||| Sbjct 299965 CTTCATCTGGTTCTCCGACTTCGAGGTGG 299937 >seq4 Length=1325655 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| |||||||| |||||||| || |||||||| ||||| Sbjct 386585 AATGCAGATCTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTC 386644 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||| | || || |||||||||||||||||||| || ||||| Sbjct 386645 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 386704 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || || || |||||||| |||||||| | || ||||| | ||||| || Sbjct 386705 GCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAA 386764 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| || |||| || || ||||| Sbjct 386765 CATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGTGG 386812 >seq3 Length=1361780 Score = 187 bits (206), Expect = 3e-42 Identities = 181/233 (78%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 27400 ACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG 27459 || ||| ||||||||||||||||||| ||||| ||||||||||| || || ||||| ||| Sbjct 557639 ACAATAGTGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAG 557698 Query 27460 TCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 || ||| | ||||| || | ||| | || || ||||||||||||||||| || || Sbjct 557699 TCCTCTGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCG 557758 Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 ||||||||||| || ||||| || || ||||| |||||||| | || || || | ||| Sbjct 557759 GACCAGCAGCGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGAC 557818 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||| ||||| |||||||| ||||| || |||| || || || || Sbjct 557819 TACAACATCCAGAAGGAGTCCACTCTCCATCTGGTTCTGCGACTCCGAGGAGG 557871 >seq1 Length=2434256 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 80875 TGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCT 80934 |||||| ||||||||| | || || || ||| ||||| ||||| || ||||||||| Sbjct 1213309 TGGTTCAGCTTCACAAACTCAGGCAGCGCCACGGAAGCCAGGTTGCAAACAGCCACCTCT 1213368 Query 80935 TCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGG 80994 || | | | ||| ||| || || ||||||| ||| || || || || || || || Sbjct 1213369 TCGGGAGACGAGTACTGGACAATCTCAGTGCACAGATTGGACGATTTGATGGTGCCGAGA 1213428 Query 80995 TTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGG 81045 || |||||||| || || |||||||| ||| || || |||| ||||| Sbjct 1213429 TTCTTCTGGTTGGATTTCGCGTTGCAGCTGTCTTTATACAGCATGAACGGG 1213479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310086329280