Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq10 192 5e-44 >seq10 Length=1040050 Score = 192 bits (212), Expect = 5e-44 Identities = 406/605 (67%), Gaps = 22/605 (4%) Strand=Plus/Plus Query 29872 CTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTC 29931 |||||| | ||||||| |||| ||| ||||| ||||| |||| | ||||||| | ||| Sbjct 846390 CTTCAGAGCGTCCACGTGATCCTTGTACACGTGCGCGTCGCCCATGGTGTGGACGAGCTC 846449 Query 29932 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29991 || || || | || || || || ||||| ||| | |||| ||| ||| || Sbjct 846450 GCCGCAGTCCAGATCCGTCACCTGCGCAATCATCCGCGTCAACAGAGCGTACGAGGCAAT 846509 Query 29992 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 30051 ||| ||||| ||||| || |||| ||| | |||| |||||| ||||| ||||| || | Sbjct 846510 GTTGAAGGGCACCCCCAGTCCCAGGTCACAGGACCGCTGGTACAGCTGGCACGACAGTTG 846569 Query 30052 TCCGTCGCTC------------------ACGTAAAACTGACACATGGCGTGGCACGGAGG 30093 ||| | || ||||| |||||||| | |||||| ||||| Sbjct 846570 GCCGCGGTTCTTGTTCTTCTTGTACGACACGTAGAACTGACAGAACATGTGGCAGGGAGG 846629 Query 30094 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 30153 |||||||| | | || |||||||| || ||| ||||| || | ||| | Sbjct 846630 CAGAGCCATCTTGGAGAGATCCGCAGGGTTCCATGCCGACAGAATGATTCGGCGGTCCTG 846689 Query 30154 TGGGTTGTTCCTGATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 30212 |||||| | ||| ||| || | | | || |||||||||||| ||| |||| || Sbjct 846690 AGGGTTGGTTTTGA-GAGTGTGAATCACCTGTTTCAGCTGATCCACGCCCTGGCCCGTGT 846748 Query 30213 AGTCTG-CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACC 30271 |||||| | || |||| ||||||||||||||||||| | ||| || || ||||| || Sbjct 846749 AGTCTGTGTCGCA-GTCCTTGTACTCTGCTCCGAAATGGCGCCATTGAAAGCCGTAGACG 846807 Query 30272 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30331 |||||||| || || ||| | ||| | | || ||| |||| ||| || |||| Sbjct 846808 GGTCCCAGATCGCCTTCTCGTCGGTGGCCCAGTCCGGCCTTTTCCAGAAACTCCTTGGAT 846867 Query 30332 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCT 30391 || ||| |||||||||| | | ||||| || | ||| || ||| |||| Sbjct 846868 CCATTGCCGTCCCAGATGTGAATGTTTTTCTCGCTCAGTTTCTTGCCGTCAGTGCACCCG 846927 Query 30392 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 30451 || ||||||| |||||||||| ||| || ||||||||| || || || | Sbjct 846928 GCCACAAACCACAAAAGCTCCTCCAACACGCCCCGGTAAAAGACCCGTTTTGTGGTCAAC 846987 Query 30452 AGGGG 30456 ||||| Sbjct 846988 AGGGG 846992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310182116048