Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq4 178 3e-39
seq14 165 2e-35
seq3 163 7e-35
>seq4
Length=1325655
Score = 178 bits (196), Expect = 3e-39
Identities = 173/223 (78%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| || || || || ||||||||||| || |||||||| || || | ||||||
Sbjct 386806 CGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTT 386747
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || || || |||||||| || ||||||||||| || || ||||| || |||| |||
Sbjct 386746 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCC 386687
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| || ||||| ||||||||||| || || ||||| ||
Sbjct 386686 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 386627
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116
||||| ||||| || || || ||||| ||||| | ||||||||
Sbjct 386626 GTGATAGTCTTACCGGTAAGGGTCTTGACAAAGATCTGCATTT 386584
>seq14
Length=605277
Score = 165 bits (182), Expect = 2e-35
Identities = 169/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| || || || || ||||||||||| || |||||||| || || | |||||
Sbjct 299715 CGGAGTCGGAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTT 299774
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || || || |||||||| || || || || || || || ||||| || |||| |||
Sbjct 299775 CGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCC 299834
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||| ||||| || || || || |||||||| ||| ||||||||||||
Sbjct 299835 TCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGA 299894
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| |||||||| || || ||||| ||||| | ||||||
Sbjct 299895 GTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 299935
Score = 141 bits (156), Expect = 2e-28
Identities = 144/188 (77%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| || |||||||| |||||||| || || |||||||| || || | ||||||
Sbjct 298769 CGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTT 298828
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || || ||||||||||| || ||||||||||| || || ||||| || || | ||
Sbjct 298829 CGACCGTCCTCCAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACCC 298888
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||| ||||| || ||||| |||||||||||||| || ||||| ||
Sbjct 298889 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGG 298948
Query 211074 GTGATCGT 211081
|| || ||
Sbjct 298949 GTAATGGT 298956
Score = 122 bits (134), Expect = 2e-22
Identities = 132/175 (75%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||||| || || || ||||| || ||||| || |||||||| ||||| | || ||
Sbjct 299943 CGAAGTCGGAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGAGAGAGTT 300002
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| || |||||||| || ||||| || || || || ||||| || |||| ||
Sbjct 300003 CGACCATCCTCAAGCTGCTTTCCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATACCC 300062
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068
||||||||||||||||| || ||||| ||||| || || ||| ||| ||||
Sbjct 300063 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTATCGGAGGATTCGACCT 300117
>seq3
Length=1361780
Score = 163 bits (180), Expect = 7e-35
Identities = 168/220 (76%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| || || || || ||||||||||| || |||||||| || || | ||| ||
Sbjct 557865 CGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTT 557806
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || || || ||||||||||| ||||| || || || || ||||| || || | |||
Sbjct 557805 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCC 557746
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| || ||||| || |||||||||||| || ||||||||
Sbjct 557745 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGG 557686
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113
||||| ||||| || || || ||||| ||||| | ||||
Sbjct 557685 GTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151346528060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |