Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 seq4 93.3 4e-14 seq14 89.7 4e-13 >seq3 Length=1361780 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || | |||| ||| || ||| ||| || || || || || || | | Sbjct 557871 CCTCCTCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 557812 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| |||| || ||||| ||||| || || || || ||||||||||| | ||| Sbjct 557811 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 557752 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||| |||||| ||| || |||| ||| | | | || || |||||||| Sbjct 557751 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAGGACTCCAC 557693 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 || | |||||| | || || || || || || ||||||||||||| Sbjct 557692 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646 >seq4 Length=1325655 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || || || | ||| ||||| |||| || ||||| Sbjct 386789 ATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTG 386730 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || ||||| ||||||||||| | ||| | | ||| |||||| ||| || Sbjct 386729 CTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTT 386670 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | || ||| |||||||| || | |||||| | || || | Sbjct 386669 GGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGG 386611 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || |||||||| ||||| Sbjct 386610 TAAGGGTCTTGACAAAGATCTGCAT 386586 >seq14 Length=605277 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| ||| || || || || || || | || ||||| |||| ||| Sbjct 299727 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCA 299786 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || ||||| || || ||||||||||| | ||| | | ||| |||||| Sbjct 299787 AGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 299846 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| | | | || ||| ||||| || || | ||||| | ||| Sbjct 299847 ATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTT 299906 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || |||||||| ||||| Sbjct 299907 CCAGTCAGGGTCTTGACAAAGATCTGCAT 299935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545369656172