Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3 168 6e-37 >seq3 Length=1361780 Score = 168 bits (186), Expect = 6e-37 Identities = 566/874 (65%), Gaps = 19/874 (2%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| ||||| |||||||| |||||||| || || || || | | || || || Sbjct 15208 TTCTGGTAGTCGGAGACTCGCTTCTCGAAGAAGTTGGTCTTACCGGCCAGAGAGATGTTC 15149 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAA----TGTTTTTCACACTTTAGAGCTAC 4372 ||||| || || || || || || | |||||| || | || | ||||| || Sbjct 15148 TCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGTGTTGCCG----AGAGCAAC 15093 Query 4373 AAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAAT 4432 |||| |||||| || ||||| || || ||||||| |||||| | | ||| || || | Sbjct 15092 CAGCAGTCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGAG 15033 Query 4433 TAATCTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGA 4491 | | |||||| || |||| |||| ||||| || || || || || || | Sbjct 15032 CAGAC-CACAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATGCCAACAGCCTCGACAA 14974 Query 4492 TTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACG 4551 | | || | | | | || || ||| || | | || || | | ||| | Sbjct 14973 TGACGTCCTCGACAATCTTCTTGGAGGGTCGGTTCTCGAGGTGAGAGAAGAGCAGACAGG 14914 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 |||| || |||| ||| ||||||| ||| || ||||| || || || | |||| Sbjct 14913 CAAAGTCGGTGTGCAGACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGTGAGGCCGG 14854 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | ||||| ||| || ||||| || || | ||| || || || || || || || | Sbjct 14853 GCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAAAAAGATAC 14794 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGG---CTTTGTCTTTAA 4728 | || ||||||||||| || | | | | | | | || || ||| | | ||| || Sbjct 14793 CCTCGACGGCGGCAAAGGC-AATGAGCCGCTCGCCAA--AGGTGGACTCCTCGTCGGAAA 14737 Query 4729 TCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA 4788 |||| || | ||||||| || || ||||| | ||| || || || | || ||||| | Sbjct 14736 TCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGA 14677 Query 4789 ATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTT 4848 | | | || || ||||| | || || ||||| || || || || ||| Sbjct 14676 ACAGGTAGTTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATGAGCAGCGAGTAGGTTT 14617 Query 4849 CAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTT 4908 | || || || || || || ||||| || ||||| ||||| | || || | | | Sbjct 14616 CCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGAGCCT 14557 Query 4909 GAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 | || ||| | |||| || || | ||| ||||| || || ||||| ||| |||| Sbjct 14556 GGACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTGACGATTCCGTCGGAGGCAGCAA 14497 Query 4969 AAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGT 5025 | || |||| ||| ||||| || ||| | | ||||| || ||| || | ||||| Sbjct 14496 AGAAGGCCAGAACGTGAGAGATGAAGAATCGCTCGTCGTTGTTGAGTCGGTTCTCCCAGT 14437 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 | || || || | ||| | || ||| ||||||| || || || || || || | Sbjct 14436 CGCCCATGTCCTTGCCGAGATCGATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCT 14377 Query 5086 TGTACATAGACCAAATATCAGGATACTGAATCGG 5119 ||||||| ||| || ||| | ||||| || || Sbjct 14376 TGTACATCTGCCAGATCTCATGGTACTGGATGGG 14343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049370994652