Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq10 201 8e-47 seq1 86.0 5e-12 >seq10 Length=1040050 Score = 201 bits (222), Expect = 8e-47 Identities = 409/605 (68%), Gaps = 22/605 (4%) Strand=Plus/Plus Query 27138 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 27197 |||||| | |||||||||||| ||| ||||| ||||| |||| ||||||||| | ||| Sbjct 846390 CTTCAGAGCGTCCACGTGATCCTTGTACACGTGCGCGTCGCCCATGGTGTGGACGAGCTC 846449 Query 27198 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 27257 || || || | || || || || ||||| ||| | |||| ||| ||| || Sbjct 846450 GCCGCAGTCCAGATCCGTCACCTGCGCAATCATCCGCGTCAACAGAGCGTACGAGGCAAT 846509 Query 27258 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 27317 ||| ||||| ||||| || |||| ||| | |||| |||||| ||||| ||||| || | Sbjct 846510 GTTGAAGGGCACCCCCAGTCCCAGGTCACAGGACCGCTGGTACAGCTGGCACGACAGTTG 846569 Query 27318 TCCATCG-----------CTT-------ACGTAAAACTGACATATGGCGTGGCACGGAGG 27359 || | ||| ||||| |||||||| | |||||| ||||| Sbjct 846570 GCCGCGGTTCTTGTTCTTCTTGTACGACACGTAGAACTGACAGAACATGTGGCAGGGAGG 846629 Query 27360 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 27419 |||||||| | | || |||||||| || ||| ||||| || | ||| | Sbjct 846630 CAGAGCCATCTTGGAGAGATCCGCAGGGTTCCATGCCGACAGAATGATTCGGCGGTCCTG 846689 Query 27420 TGGGTTGTTCCTGATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 27478 |||||| | ||| ||| || | | | || |||||||||||| ||| |||| || Sbjct 846690 AGGGTTGGTTTTGA-GAGTGTGAATCACCTGTTTCAGCTGATCCACGCCCTGGCCCGTGT 846748 Query 27479 AGTCTACC-CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACC 27537 ||||| | || |||| ||||||||||||||||||| | |||||| || ||||| || Sbjct 846749 AGTCTGTGTCGCA-GTCCTTGTACTCTGCTCCGAAATGGCGCCATTGAAAGCCGTAGACG 846807 Query 27538 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 27597 |||||||| || || ||| | ||| | | || ||| |||| ||| || |||| Sbjct 846808 GGTCCCAGATCGCCTTCTCGTCGGTGGCCCAGTCCGGCCTTTTCCAGAAACTCCTTGGAT 846867 Query 27598 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 27657 || ||| |||||||||| | | |||||| || | ||| || ||| |||| Sbjct 846868 CCATTGCCGTCCCAGATGTGAATGTTTTTCTCGCTCAGTTTCTTGCCGTCAGTGCACCCG 846927 Query 27658 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 27717 || ||||||| |||||||||| ||| || ||||||||| || || || | Sbjct 846928 GCCACAAACCACAAAAGCTCCTCCAACACGCCCCGGTAAAAGACCCGTTTTGTGGTCAAC 846987 Query 27718 AGGGG 27722 ||||| Sbjct 846988 AGGGG 846992 >seq1 Length=2434256 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 48509 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-C 48567 |||||||||| | || | ||| ||| | ||| |||| || ||||||||||| || | Sbjct 1009165 TCGTCAAGGTCCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCCTCTC 1009224 Query 48568 TTCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC-CAGGAGGACATGCCCTTCGA 48626 |||||| || ||||| || ||| | | | | | || ||||| ||||||||| Sbjct 1009225 GTCACGGA-CAGAAGGGTACCATTGGTGT-GACTTATCGACACGAGGATATGCCCTTCTC 1009282 Query 48627 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 48686 || || || || ||||| |||||||||||||||||||| ||||||| | ||||| Sbjct 1009283 TGCTGAGGGAGTTGTCCCCGATATCATCATCAACCCCCACGCCATTCCCTCGCGTATGAC 1009342 Query 48687 CGT 48689 ||| Sbjct 1009343 CGT 1009345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507001851764