Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq24 168 9e-37
seq3 145 1e-29
>seq24
Length=170883
Score = 168 bits (186), Expect = 9e-37
Identities = 455/688 (66%), Gaps = 10/688 (1%)
Strand=Plus/Minus
Query 77943 ACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA 78002
|| || |||| || || || || || |||||||| | | ||| || | | | ||
Sbjct 96001 ACGTCGTCCAGACCGGGACACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCTCG 95942
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||| | ||| || ||||| || ||||| || || | || || ||||||| || |
Sbjct 95941 ACTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCGGGCTCGAATC 95882
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
|| || ||||| |||||| || ||| ||||| | || || ||||| ||
Sbjct 95881 TCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAGGGC 95822
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182
|| || || || || | |||| ||||| || || |||||||| || | |||| |||
Sbjct 95821 TCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCCCTGGTCCACGTATCGGGCA 95762
Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242
||||| || || || | || ||| || | |||||||| || ||||| || || || | |
Sbjct 95761 GTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTGCCGGCA 95702
Query 78243 ATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTA 78302
|| || || | || || || || ||||| | || || || || || |||
Sbjct 95701 ATGTAGGAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACCGATACCGCCAGCAGACTTG 95642
Query 78303 GATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG 78362
|| || ||||| || || | ||||||||||| || || || ||| ||| |||||
Sbjct 95641 GAAATCAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATG 95582
Query 78363 TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGA 78422
|| | ||| ||||| ||||| || | || ||||| || || | | || ||
Sbjct 95581 TTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCAGCGTTGTAGAGGGTGGGG 95522
Query 78423 GATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTAT 78481
|| || || ||||| | || | ||| | |||| ||||| || || || ||| | ||
Sbjct 95521 GAAGCGTGGGTAAAGTACTTCTGAGACATGTAG-TTGTAGGTCTCGATGGCTCGGGCAAT 95463
Query 78482 GTC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTT---CAA 78537
||| || | || ||||| || | || ||||| | ||| ||||| |||| | |||
Sbjct 95462 GTCGTCACCG-TGGATTCCGACGGACACTCGCATGATCATCTGCTGGGGTCGCTCGGCAA 95404
Query 78538 CCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGT 78597
| | || || | | ||||| ||||| | |||| |||||||| ||||| ||||
Sbjct 95403 CAG-CT--CCGTTGACTCGCAACAGGTATGCTCGCTCCAGGGTTTTAAAGCCAAAGTAGT 95347
Query 78598 TGTATGAAAAGTCTCTCTCGTAAATAAT 78625
|||| | ||||||| ||||| | |||
Sbjct 95346 TGTAGGTGAAGTCTCGGTCGTAGAGAAT 95319
>seq3
Length=1361780
Score = 145 bits (160), Expect = 1e-29
Identities = 388/589 (66%), Gaps = 8/589 (1%)
Strand=Plus/Minus
Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199
||| ||||| || || ||||| || |||| | ||| | ||||| || || |||||
Sbjct 14918 ACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGTGAG 14859
Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259
|||||||| || || || || |||||||| || || | |||||||| || || || ||
Sbjct 14858 GCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAAAAA 14799
Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG---CTTCGTTGTG 48316
|| || || ||||| ||||| || | || | ||| || | ||| | |||| |
Sbjct 14798 GATACCCTCGACGGCGGCAAAGGCAATGAGCCGCTCGCCAAAGGTGGACTCCTCGTCGGA 14739
Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376
|||||| | ||||| || ||||||||||| | || || || || || || || ||
Sbjct 14738 AATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTT 14679
Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436
|| || ||||| || ||| || || | ||| || || || | || || |
Sbjct 14678 GAACAGGTAGTTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATGAGCAGCGAGTAGGT 14619
Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496
||| ||||| || || || || ||||| || ||||| || || | || || |
Sbjct 14618 TTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGAGC 14559
Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556
||| ||||| | ||||| || ||| ||||| || || ||||| || |||||
Sbjct 14558 CTGGACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTGACGATTCCGTCGGAGGCAGC 14499
Query 48557 AAAAAATGCTAATACATGTTTAATAAAATAT---TTTTCGTTG-GAAGTCAGTTTATTCC 48612
||| || || | || || || || || | |||||| |||| | || | ||
Sbjct 14498 AAAGAAGGCCAGAACGTGAGAGATGAAGAATCGCTCGTCGTTGTTGAGTC-GGTTCTCCC 14440
Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672
|||| || || || | ||| | || ||||| ||||| || || ||||| || |
Sbjct 14439 AGTCGCCCATGTCCTTGCCGAGATCGATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCT 14380
Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721
| || ||||| | ||| || ||| ||| ||||| ||||| | |||||
Sbjct 14379 TCTTGTACATCTGCCAGATCTCATGGTACTGGATGGGGAAGAGCACAAA 14331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694668417932160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |