Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq24 168 9e-37 seq3 145 1e-29 >seq24 Length=170883 Score = 168 bits (186), Expect = 9e-37 Identities = 455/688 (66%), Gaps = 10/688 (1%) Strand=Plus/Minus Query 77943 ACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA 78002 || || |||| || || || || || |||||||| | | ||| || | | | || Sbjct 96001 ACGTCGTCCAGACCGGGACACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCTCG 95942 Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| | ||| || ||||| || ||||| || || | || || ||||||| || | Sbjct 95941 ACTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCGGGCTCGAATC 95882 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || ||||| |||||| || ||| ||||| | || || ||||| || Sbjct 95881 TCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAGGGC 95822 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182 || || || || || | |||| ||||| || || |||||||| || | |||| ||| Sbjct 95821 TCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCCCTGGTCCACGTATCGGGCA 95762 Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242 ||||| || || || | || ||| || | |||||||| || ||||| || || || | | Sbjct 95761 GTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTGCCGGCA 95702 Query 78243 ATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTA 78302 || || || | || || || || ||||| | || || || || || ||| Sbjct 95701 ATGTAGGAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACCGATACCGCCAGCAGACTTG 95642 Query 78303 GATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG 78362 || || ||||| || || | ||||||||||| || || || ||| ||| ||||| Sbjct 95641 GAAATCAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATG 95582 Query 78363 TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGA 78422 || | ||| ||||| ||||| || | || ||||| || || | | || || Sbjct 95581 TTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCAGCGTTGTAGAGGGTGGGG 95522 Query 78423 GATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTAT 78481 || || || ||||| | || | ||| | |||| ||||| || || || ||| | || Sbjct 95521 GAAGCGTGGGTAAAGTACTTCTGAGACATGTAG-TTGTAGGTCTCGATGGCTCGGGCAAT 95463 Query 78482 GTC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTT---CAA 78537 ||| || | || ||||| || | || ||||| | ||| ||||| |||| | ||| Sbjct 95462 GTCGTCACCG-TGGATTCCGACGGACACTCGCATGATCATCTGCTGGGGTCGCTCGGCAA 95404 Query 78538 CCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGT 78597 | | || || | | ||||| ||||| | |||| |||||||| ||||| |||| Sbjct 95403 CAG-CT--CCGTTGACTCGCAACAGGTATGCTCGCTCCAGGGTTTTAAAGCCAAAGTAGT 95347 Query 78598 TGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||| | ||||||| ||||| | ||| Sbjct 95346 TGTAGGTGAAGTCTCGGTCGTAGAGAAT 95319 >seq3 Length=1361780 Score = 145 bits (160), Expect = 1e-29 Identities = 388/589 (66%), Gaps = 8/589 (1%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || || ||||| || |||| | ||| | ||||| || || ||||| Sbjct 14918 ACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGTGAG 14859 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | |||||||| || || || || Sbjct 14858 GCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAAAAA 14799 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG---CTTCGTTGTG 48316 || || || ||||| ||||| || | || | ||| || | ||| | |||| | Sbjct 14798 GATACCCTCGACGGCGGCAAAGGCAATGAGCCGCTCGCCAAAGGTGGACTCCTCGTCGGA 14739 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 |||||| | ||||| || ||||||||||| | || || || || || || || || Sbjct 14738 AATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTT 14679 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 || || ||||| || ||| || || | ||| || || || | || || | Sbjct 14678 GAACAGGTAGTTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATGAGCAGCGAGTAGGT 14619 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 ||| ||||| || || || || ||||| || ||||| || || | || || | Sbjct 14618 TTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGAGC 14559 Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 ||| ||||| | ||||| || ||| ||||| || || ||||| || ||||| Sbjct 14558 CTGGACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTGACGATTCCGTCGGAGGCAGC 14499 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATAT---TTTTCGTTG-GAAGTCAGTTTATTCC 48612 ||| || || | || || || || || | |||||| |||| | || | || Sbjct 14498 AAAGAAGGCCAGAACGTGAGAGATGAAGAATCGCTCGTCGTTGTTGAGTC-GGTTCTCCC 14440 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 |||| || || || | ||| | || ||||| ||||| || || ||||| || | Sbjct 14439 AGTCGCCCATGTCCTTGCCGAGATCGATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCT 14380 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | || ||||| | ||| || ||| ||| ||||| ||||| | ||||| Sbjct 14379 TCTTGTACATCTGCCAGATCTCATGGTACTGGATGGGGAAGAGCACAAA 14331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668417932160