Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq4 129 1e-24
seq14 114 3e-20
seq3 114 3e-20
>seq4
Length=1325655
Score = 129 bits (142), Expect = 1e-24
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| || || ||||| ||||| ||||| || ||||||||||| || | | ||||
Sbjct 386804 GAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCG 386745
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || || |||||||||||||| | ||||||||||| | ||||| ||
Sbjct 386744 GCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTC 386685
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | | |||| ||| ||| || ||||| ||
Sbjct 386684 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 386625
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106
||||| || || || || ||||| || |||| ||||||||
Sbjct 386624 GATAGTCTTACCGGTAAGGGTCTTGACAAAGATCTGCATTT 386584
>seq14
Length=605277
Score = 114 bits (126), Expect = 3e-20
Identities = 159/221 (72%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| ||| || ||||| ||||| ||||| || ||||||||||| || | | ||||
Sbjct 299717 GAGTCGGAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCG 299776
Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
|| || || || ||||| || || || || || | ||||||||||| | |||||
Sbjct 299777 GCCGTCCTCAAGCTGCTTT--CCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCC 299834
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| || ||||| || |||||| | || | | |||| || ||| || || |||
Sbjct 299835 TCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGA 299894
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || || || ||||| || |||| ||||||
Sbjct 299895 GTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 299935
Score = 111 bits (122), Expect = 4e-19
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| ||| ||||| || ||||| || || || ||||||||||| |||| | ||||
Sbjct 298771 GAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCG 298830
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || || |||||||||||||| | ||||||||||| | ||| || ||
Sbjct 298831 ACCGTCCTCCAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTC 298890
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || ||||| || ||||| | || | | |||| ||| ||| || ||||| ||
Sbjct 298891 CTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGGGT 298950
Query 152066 AATAGT 152071
||| ||
Sbjct 298951 AATGGT 298956
Score = 91.5 bits (100), Expect = 3e-13
Identities = 103/136 (76%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
|||| ||| || |||||||| |||||||| || |||||||||||||| | | |||||
Sbjct 299946 AGTCGGAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGAGAGAGTTCGA 300005
Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004
||||| || || ||||| || ||||| || || | ||||||||||| | || || |
Sbjct 300006 CCATCCTCAAGCTGCTTT--CCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATACCCT 300063
Query 152005 CCTTTTCTTGAATTTT 152020
|||| || || || ||
Sbjct 300064 CCTTGTCCTGGATCTT 300079
>seq3
Length=1361780
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| || || ||||| ||||| ||||| || ||||||||||| || | | |||||
Sbjct 557863 GAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCG 557804
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || || |||||||| || || | ||||||||||| | |||||| ||
Sbjct 557803 GCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCCTC 557744
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | | |||| || ||| || || || ||
Sbjct 557743 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGT 557684
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103
||||| ||||| || || ||||| || |||| ||||
Sbjct 557683 GATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820149533524
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |