Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 174 4e-38 seq4 165 2e-35 seq14 147 5e-30 >seq3 Length=1361780 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || ||||||||||||||||| ||| ||| Sbjct 557648 CAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTGAC 557707 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || |||||||| ||||||||||| Sbjct 557708 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAG 557767 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || |||||||| || |||||||| || || | |||||| | || || ||| || Sbjct 557768 CGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAACATC 557827 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||||| ||| || ||||| || Sbjct 557828 CAGAAGGAGTCCACTCTCCATCTGGTTCTGCGACTCCGA 557866 >seq4 Length=1325655 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || |||||||| |||||||| || ||| Sbjct 386589 CAGATCTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 386648 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||| || ||||||||||| Sbjct 386649 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 386708 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || |||||||| || || | || ||| | || || ||| || Sbjct 386709 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAACATC 386768 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||||| ||| || ||||| || Sbjct 386769 CAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGA 386807 >seq14 Length=605277 Score = 147 bits (162), Expect = 5e-30 Identities = 146/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013 || || ||||| ||||| || || ||||||||||| |||||||| ||||||||| Sbjct 298956 ACCATTACCCTTGAGGTCGAGTCTTCTGACACCATCGACAACGTCAAGTCCAAGATTCAG 298897 Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || ||||| ||||||||||| ||||||||||||||||| || ||||| || Sbjct 298896 GACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTGGAG 298837 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || | || ||| |||| || ||| |||| || ||||| || || || ||||| | Sbjct 298836 GACGGTCGAACCCTTTCCGACTACAACATCCAGAAGGAATCCACTCTCCACCTTGTGCTC 298777 Query 178134 AGACTCAGA 178142 ||||| || Sbjct 298776 CGACTCCGA 298768 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || ||||| || ||||| |||||||| || ||| ||| Sbjct 299932 CAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGAC 299873 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || ||||| || ||||||||||| Sbjct 299872 ACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 299813 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || || || ||||| ||||| || || || | || || | || || ||| || Sbjct 299812 CGACTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAACATC 299753 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||||| ||| | ||||| || Sbjct 299752 CAGAAGGAGTCCACTCTCCATCTGGTTCTCCGACTCCGA 299714 Score = 122 bits (134), Expect = 2e-22 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 177967 AGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA 178026 |||| ||| ||| || || ||||| |||||||| ||||| |||||||| || || | Sbjct 300117 AGGTCGAATCCTCCGATACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTA 300058 Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 | || ||||||||||| ||||| || ||||| ||||| ||||| || ||||| | |||| Sbjct 300057 TTCCCCCGGACCAGCAGCGACTGATTTTCGCTGGAAAGCAGCTTGAGGATGGTCGAACTC 299998 Query 178087 TTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | | ||||| ||| |||| || || || || || ||||| ||| | |||| Sbjct 299997 TCTCTGATTACAACATCCAGAAGGAGTCTACCCTTCATCTGGTTCTCCGACT 299946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730521396536