Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3 174 4e-38
seq4 165 2e-35
seq14 147 5e-30
>seq3
Length=1361780
Score = 174 bits (192), Expect = 4e-38
Identities = 170/219 (78%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || || || || || || || ||||||||||||||||| ||| |||
Sbjct 557648 CAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTGAC 557707
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| ||||| |||||||| || |||||||| |||||||||||
Sbjct 557708 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAG 557767
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| || |||||||| || |||||||| || || | |||||| | || || ||| ||
Sbjct 557768 CGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAACATC 557827
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || || ||||| ||| || ||||| ||
Sbjct 557828 CAGAAGGAGTCCACTCTCCATCTGGTTCTGCGACTCCGA 557866
>seq4
Length=1325655
Score = 165 bits (182), Expect = 2e-35
Identities = 168/219 (77%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || || || || || || |||||||| |||||||| || |||
Sbjct 386589 CAGATCTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 386648
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || ||||| || |||||||||||
Sbjct 386649 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 386708
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||||||||| || |||||||| || || | || ||| | || || ||| ||
Sbjct 386709 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAACATC 386768
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || || ||||| ||| || ||||| ||
Sbjct 386769 CAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGA 386807
>seq14
Length=605277
Score = 147 bits (162), Expect = 5e-30
Identities = 146/189 (77%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013
|| || ||||| ||||| || || ||||||||||| |||||||| |||||||||
Sbjct 298956 ACCATTACCCTTGAGGTCGAGTCTTCTGACACCATCGACAACGTCAAGTCCAAGATTCAG 298897
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073
||||| || || ||||| ||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 298896 GACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTGGAG 298837
Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| || | || ||| |||| || ||| |||| || ||||| || || || ||||| |
Sbjct 298836 GACGGTCGAACCCTTTCCGACTACAACATCCAGAAGGAATCCACTCTCCACCTTGTGCTC 298777
Query 178134 AGACTCAGA 178142
||||| ||
Sbjct 298776 CGACTCCGA 298768
Score = 138 bits (152), Expect = 3e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || || || ||||| || ||||| |||||||| || ||| |||
Sbjct 299932 CAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGAC 299873
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| |||||||||||||| || ||||| || |||||||||||
Sbjct 299872 ACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 299813
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| || || || ||||| ||||| || || || | || || | || || ||| ||
Sbjct 299812 CGACTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAACATC 299753
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || || ||||| ||| | ||||| ||
Sbjct 299752 CAGAAGGAGTCCACTCTCCATCTGGTTCTCCGACTCCGA 299714
Score = 122 bits (134), Expect = 2e-22
Identities = 130/172 (76%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 177967 AGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA 178026
|||| ||| ||| || || ||||| |||||||| ||||| |||||||| || || |
Sbjct 300117 AGGTCGAATCCTCCGATACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTA 300058
Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086
| || ||||||||||| ||||| || ||||| ||||| ||||| || ||||| | ||||
Sbjct 300057 TTCCCCCGGACCAGCAGCGACTGATTTTCGCTGGAAAGCAGCTTGAGGATGGTCGAACTC 299998
Query 178087 TTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
| | ||||| ||| |||| || || || || || ||||| ||| | ||||
Sbjct 299997 TCTCTGATTACAACATCCAGAAGGAGTCTACCCTTCATCTGGTTCTCCGACT 299946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730521396536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |