Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3 125 2e-23 seq1 123 5e-23 >seq3 Length=2716294 Score = 125 bits (138), Expect = 2e-23 Identities = 569/891 (64%), Gaps = 21/891 (2%) Strand=Plus/Minus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 ||||| ||||| || | ||| || ||| | |||||||||||||| | ||| |||||||| Sbjct 857458 TTCCCCATCCAGTACCACGAGATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGG 857399 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAAC---TCAAT 229875 ||| | ||||| || ||| | ||| | | ||||||| ||||| | |||| Sbjct 857398 ACCGCCGAGGAGATTGATCTCGGCAAGGACATGGGCGACTGG---GAGAACCGGCTCAAC 857342 Query 229876 GACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATT 229935 ||||||| || |||||| ||| | || | || || || | |||||||||||| Sbjct 857341 AACGACGAGCGGTTCTTCATCTCGCACGTGCTGGCCTTCTTTGCTGCTTCCGATGGTATT 857282 Query 229936 GTGATGGAAAATCTGCAG-ACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCA 229994 |||| || || ||| | | | | | | | | | || ||| || ||||| | Sbjct 857281 GTGAACGAGAACCTGGTGGAGCGATTCTCCGGCG-AGGTGCAGGTCCCCGAGGCCAAGTG 857223 Query 229995 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTAT 230054 || || | | ||| | | | || ||||| || ||| || | ||||| || Sbjct 857222 CTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTACTCGCTGCTGAT 857163 Query 230055 CGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAACAT 230114 |||| | || ||| | || || | | | || || | ||||| || | ||| Sbjct 857162 CGACACATACATCAAGGACCCCAAGGAGCGAACCTACCTGTTCAACGCCATCGAGACCAT 857103 Query 230115 CCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGG--CTAGAAC--CTGGTAAAT 230170 ||| | | || ||||| | ||||| | || ||| || || | || | Sbjct 857102 CCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCGAC 857043 Query 230171 CGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 | |||| |||||| || | || | | || || || || | || ||||| | Sbjct 857042 C-TTTGGCGAGCGGCTGATAGCTTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 856984 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 || | ||||||| ||||| ||| |||| | ||||| |||||| | || |||| Sbjct 856983 TCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCAACG 856924 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAG 230349 || ||||| || ||||||||||| || || | | || | | || | | || | Sbjct 856923 AGCTCATCTCCCGAGACGAGGGTCTGCA-CACCGACTTTGCCTGTCTGCTCTTCTCGCAC 856865 Query 230350 CTCCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAA 230406 ||| ||||| | ||| | | ||| | ||| | | | ||| || || |||| Sbjct 856864 CTCGAGAAC---CGACCCTCCAAGAAGATTGTCGAGGACGTGATTGTCGAGGCCGTTGGT 856808 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAA 230466 | ||| |||||||| | ||||| | || ||| | || | || |||||||| | Sbjct 856807 ATCGAGCAGGAGTTCCTGACCGACGCCCTGCCCTGTGGTCTGCTCGGAATGAACGCCAAG 856748 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | |||||||| || || || |||||||| | | ||||| || || || Sbjct 856747 CTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCTCTCGGCAACTCC 856688 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 || || |||||||| | |||||||| | || |||||| ||| ||||| || ||| Sbjct 856687 AAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAG 856628 Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||||| ||||| || ||||| |||| | | || || ||| Sbjct 856627 ACCAACTTCTTCGAGAAGCGGGTGTCCGACTACCAGAAGGCCGGCGTCATG 856577 Score = 118 bits (130), Expect = 2e-21 Identities = 213/309 (69%), Gaps = 7/309 (2%) Strand=Plus/Minus Query 319363 TCGGTAAGGGCGTAGTAA--CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGAT 319420 ||||| |||| |||||| || || || || ||| ||| || || |||| ||| | Sbjct 942623 TCGGTCAGGGTGTAGTAGGCCTTGCCC--TCAGGTCGCACCTTGACAAAGTCGGCCAGGT 942566 Query 319421 TTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAG 319480 | |||||||| | |||||| ||| ||||| || ||| ||| || || | Sbjct 942565 TACCCTTGTAGTAGACCAGCTTCTTGTTC---TCGTAGTGAGCAATGTCGGTACAGACGG 942509 Query 319481 CGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCA 319540 |||| ||||| |||||||||||||| ||||||| | | | ||| || || | || Sbjct 942508 CGTCCAGGAAGCCGGAGTCGTGTGAAACAATCAGAGAGGTGATGTCGGTATGGGCCACCA 942449 Query 319541 GGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAA 319600 |||| || || |||| | ||||| |||| |||||||| || ||||| || || | Sbjct 942448 GGTAGTCCTGCAGCCACTTGACGTTGCCCACATCCAGATGGTTAGTAGGCTCATCGAGCA 942389 Query 319601 GCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTC 319660 |||| | | || |||| |||||| || || || || | || ||||| ||||| |||| Sbjct 942388 GCAGAATGTCGGCCTTCATGAGCATGGCTCGGGCCAGCTCCAGCTTCATCTTCCATCCTC 942329 Query 319661 CGGAAAGAG 319669 | || |||| Sbjct 942328 CAGACAGAG 942320 >seq1 Length=3339266 Score = 123 bits (136), Expect = 5e-23 Identities = 134/175 (77%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || |||| ||||||||| |||| || ||||||||||| || ||||| || || Sbjct 1183222 GGGGAAACCCTCAACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTACCAGCACC 1183281 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAA-CCGCGTGTTGTTCA 319975 ||| || ||||| |||||||| || || || || | || ||| | | || ||||| Sbjct 1183282 GTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTTGA-GTCGAAGCTGGGTTCGGTTCA 1183340 Query 319976 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 | ||||| || |||| || |||||||| || ||||| | |||||||||||| || Sbjct 1183341 GCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCTCC 1183395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823444311830