Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 522 3e-143 seq4 141 1e-28 seq11 140 3e-28 seq8 129 6e-25 >seq3 Length=2716294 Score = 522 bits (578), Expect = 3e-143 Identities = 642/865 (74%), Gaps = 19/865 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||||||||| ||||||| ||||||||| ||| | |||||||| || |||| || Sbjct 857497 GAGCCGCTGCTCAAGGAGAACCACCGCCGGTTTGTGCTCTTCCCCATCCAGTACCACGAG 857438 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||||||| | || || Sbjct 857437 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATCTC 857378 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||||||| || | ||| || ||||||| |||||| | Sbjct 857377 GGCAAGGACATGGGCGACTGGGAGAACCGGCTCAACAACGACGAGCGGTTCTTCATCTCG 857318 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||||||||| || || || ||| || || || |||||||| ||||| ||||| Sbjct 857317 CACGTGCTGGCCTTCTTTGCTGCTTCCGATGGTATTGTGAACGAGAACCTGGTGGAGCGA 857258 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||||||||| ||||||| ||||||||||||||| |||||| ||| Sbjct 857257 TTCTCCGGCGAGGTGCAGGTCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATG 857198 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929 |||||| | |||||||||| ||| ||| || |||||||| ||| | | | | | Sbjct 857197 GAGAACATCCACTCGGAAACGTACTCGCTGCTGATCGACACATACATCAAGGACCCCAAG 857138 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 ||| ||| || | | ||| |||||||||||||| || || ||| |||| |||||||| Sbjct 857137 GAGC-GAACCTACCT--GTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCC 857081 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || |||||||| |||||| ||| | ||| | |||| |||||||| ||| | || Sbjct 857080 GACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCGACCTTTGGCGAGCGGCTGATAGCT 857021 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || |||||||||||| ||||||| || ||| |||||| |||| || ||||||||| Sbjct 857020 TTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCCATCTTCTGGCTCAAG 856961 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || || |||||||||||||| || ||| |||||||||||||||| | ||||||||| Sbjct 856960 AAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGT 856901 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 ||||| ||||||||||||| |||| ||| ||| | | | | ||||| | | | Sbjct 856900 CTGCACACCGACTTTGCCTGTCTGCTCTTCTCGCACCTCGAGAACCGACCCTCCAAGAAG 856841 Query 117230 CGCGTC-AGG--GAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 ||| ||| | ||| || ||| || || | ||||||||| ||||| ||||| Sbjct 856840 ATTGTCGAGGACGTGATTGT---CGAGGCCGTTGGTATCGAGCAGGAGTTCCTGACCGAC 856784 Query 117287 GCGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGT 117344 || ||| || ||| ||||||| ||| | || || || | |||| || ||||| |||| Sbjct 856783 GCCCTGCCCTGTG-GTCTGCTCGGAATGAA-CGCCAAGCTCATGTGCCAGTACATTGAGT 856726 Query 117345 TCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACC 117404 | ||||||||| | |||||| | | || | | | ||||| ||||||| | |||||| Sbjct 856725 TTGTCGCCGACCGTCTGCTGGTTGCTCTCGGCAACTCCAAGGTCTACAACTCCACCAACC 856666 Query 117405 CGCTGGACTTTATGAACCTCATCTC 117429 | | ||||| ||| | |||||| Sbjct 856665 CCTTCGACTTCATGGAGAACATCTC 856641 >seq4 Length=2565013 Score = 141 bits (156), Expect = 1e-28 Identities = 162/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| || || || || || || ||||| ||||||||| |||| || || | ||| Sbjct 110344 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 110285 Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | |||| ||||| || || | ||||| |||||||| ||| |||||||| Sbjct 110284 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 110226 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| || | ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 110225 CAGCGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAAC 110166 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| ||||| || || |||| Sbjct 110165 ATCCAGAAGGAGTCCACTCTGCACCTTGTCCTGCG 110131 >seq11 Length=586936 Score = 140 bits (154), Expect = 3e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || ||||||||| |||| ||||| | | Sbjct 305881 ATGCAGATTTTCGTGAAGACCCTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCT 305940 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| ||||| |||||| ||||||| Sbjct 305941 GACACTATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 305999 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| ||| || || ||||| || |||| || |||||| ||||||||| Sbjct 306000 GCAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGACGGACGAACCCTCTCCGACTACAA 306059 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| |||| || || || ||| Sbjct 306060 CATCCAGAAGGAATCCACTCTCCACCTTGTG 306090 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| |||| || || || || Sbjct 305653 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCCTCC 305712 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || |||| ||||| ||||| || ||| ||||||| Sbjct 305713 GATACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCA 305771 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| ||| || || ||||| || |||| || || || ||||||||| Sbjct 305772 GCAGCGACTTATCTTCGCTGGTAAGCAGCTCGAGGACGGACGAACTCTGTCCGACTACAA 305831 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 305832 CATCCAGAAGGAGTCTACTCTCCATCTGGT 305861 Score = 114 bits (126), Expect = 1e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 40738 GTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCAT 40796 ||||| || |||||| | | | |||| ||||| || |||| ||||| ||||| || Sbjct 304913 GTCGAGTCCTCCGACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAAT 304971 Query 40797 CCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856 ||| |||||||||| |||||||| | ||| || || ||||| || |||| || || || Sbjct 304972 TCCCCCGGACCAGCAGCGACTCATTTTCGCCGGTAAGCAGCTCGAGGACGGACGAACTCT 305031 Query 40857 CAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||||||||| |||| || ||||| || Sbjct 305032 GTCCGACTACAACATCCAGAAGGAGTCCACCCTTCATCTGGT 305073 >seq8 Length=911341 Score = 129 bits (142), Expect = 6e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || || || || || || || || || || |||||| | || || || | Sbjct 549689 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 549630 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | |||| ||||| || || | ||||| ||||| || ||| ||||| Sbjct 549629 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 549571 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||| |||| ||| || || ||||| || |||| || ||||| |||||| Sbjct 549570 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 549511 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||| |||| || ||||| || |||| Sbjct 549510 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 549473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218935950160