Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01]
41 sequences; 21,824,367 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq4 136 5e-27
seq11 120 3e-22
seq8 111 2e-19
>seq4
Length=2565013
Score = 136 bits (150), Expect = 5e-27
Identities = 168/227 (74%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||||| | |||| || | |||| ||| |||||| || || ||||| ||||
Sbjct 110119 CCTCCTCGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 110178
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || |||| || |||||||| || ||||| || |||||||||||||| | ||
Sbjct 110179 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGA 110238
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135
| || |||||||||| ||| || |||| ||| | | | |||||| || |||||
Sbjct 110239 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCAC 110297
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182
|||| |||||||| ||||| || || ||||| |||||||||||||
Sbjct 110298 CTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 110344
>seq11
Length=586936
Score = 120 bits (132), Expect = 3e-22
Identities = 146/194 (75%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | |||||| || |||| || |||||||||||||||||
Sbjct 305844 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCGTCCTCGAGCTGCTTACCAGCGAA 305785
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| |||||||||||||| | || | | |||||||||| ||| | || | |||| ||
Sbjct 305784 GATAAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 305727
Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169
| | | | || ||| || || || |||| |||||||| || || || || |||||
Sbjct 305726 TTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTTCCAGTCAGGGTCTTG 305667
Query 43170 ACAAAGATTTGCAT 43183
|||||||| |||||
Sbjct 305666 ACAAAGATCTGCAT 305653
Score = 96.9 bits (106), Expect = 4e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || ||||| || | || || || |||| || ||||||||||| |||||
Sbjct 306071 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAG 306012
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| |||||||||||||| | || | | |||||||||| ||| || |||| |||
Sbjct 306011 ATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 305953
Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | ||||| || || || |||| |||||||| || || || || ||||| ||
Sbjct 305952 GTCGATAGTGTCAGAAGACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTCAC 305893
Query 43172 AAAGATTTGCAT 43183
|| || |||||
Sbjct 305892 GAAAATCTGCAT 305881
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||| ||| | ||| |||||| || || ||||| || | |||||| || |||| ||
Sbjct 305073 ACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCGTCCTCG 305014
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091
||||||||||| ||||| ||||||||||||||||| | || | | ||||||||||
Sbjct 305013 AGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 304957
Score = 95.1 bits (104), Expect = 1e-14
Identities = 116/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || ||||||||||||||||| ||||||||||||||||| | || | | |||||||
Sbjct 305247 TCCTCAAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTG 305188
Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| || |||| ||| | | | |||||| || || || |||| |||||
Sbjct 305187 TCCTGGATCTTGGACTTGA-CGTTGTCGATAGTGTCGGAGGACTCAACCTCGAGAGTGAT 305129
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| || || || || ||||| || || || |||||
Sbjct 305128 GGTCTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 305093
>seq8
Length=911341
Score = 111 bits (122), Expect = 2e-19
Identities = 157/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| || | ||| | ||| |||||| || || ||||| |||| || || || ||
Sbjct 549473 CGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCG 549532
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || ||||||||||| ||||| || |||||||||||||| | || | | |||||||
Sbjct 549533 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 549592
Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| || |||| ||| | | | |||||| || ||||| || | |||||
Sbjct 549593 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 549651
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185
|| || || || || ||||| ||||| || |||||||
Sbjct 549652 AGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 549689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817306943480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |