Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4 136 5e-27 seq11 120 3e-22 seq8 111 2e-19 >seq4 Length=2565013 Score = 136 bits (150), Expect = 5e-27 Identities = 168/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | |||| || | |||| ||| |||||| || || ||||| |||| Sbjct 110119 CCTCCTCGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 110178 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| || ||||| || |||||||||||||| | || Sbjct 110179 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGA 110238 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| || |||| ||| | | | |||||| || ||||| Sbjct 110239 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCAC 110297 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182 |||| |||||||| ||||| || || ||||| ||||||||||||| Sbjct 110298 CTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 110344 >seq11 Length=586936 Score = 120 bits (132), Expect = 3e-22 Identities = 146/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | |||||| || |||| || ||||||||||||||||| Sbjct 305844 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCGTCCTCGAGCTGCTTACCAGCGAA 305785 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || |||||||||||||| | || | | |||||||||| ||| | || | |||| || Sbjct 305784 GATAAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 305727 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | || ||| || || || |||| |||||||| || || || || ||||| Sbjct 305726 TTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTTCCAGTCAGGGTCTTG 305667 Query 43170 ACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 305666 ACAAAGATCTGCAT 305653 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 306071 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAG 306012 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || |||||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 306011 ATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 305953 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || || || |||| |||||||| || || || || ||||| || Sbjct 305952 GTCGATAGTGTCAGAAGACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTCAC 305893 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 305892 GAAAATCTGCAT 305881 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| ||| | ||| |||||| || || ||||| || | |||||| || |||| || Sbjct 305073 ACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCGTCCTCG 305014 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 ||||||||||| ||||| ||||||||||||||||| | || | | |||||||||| Sbjct 305013 AGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 304957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||||||||||||||| ||||||||||||||||| | || | | ||||||| Sbjct 305247 TCCTCAAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTG 305188 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | |||||| || || || |||| ||||| Sbjct 305187 TCCTGGATCTTGGACTTGA-CGTTGTCGATAGTGTCGGAGGACTCAACCTCGAGAGTGAT 305129 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || || ||||| || || || ||||| Sbjct 305128 GGTCTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 305093 >seq8 Length=911341 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| || | ||| | ||| |||||| || || ||||| |||| || || || || Sbjct 549473 CGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCG 549532 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||||||||| ||||| || |||||||||||||| | || | | ||||||| Sbjct 549533 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 549592 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | |||||| || ||||| || | ||||| Sbjct 549593 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 549651 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185 || || || || || ||||| ||||| || ||||||| Sbjct 549652 AGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 549689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817306943480