Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 192 7e-44 seq2 96.9 4e-15 >seq3 Length=2716294 Score = 192 bits (212), Expect = 7e-44 Identities = 400/592 (68%), Gaps = 8/592 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || ||| || || ||| ||||||||||||||||| || | ||||| || || || Sbjct 856877 CAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGT 856936 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| |||||||| || || ||||| || ||||| || ||||| ||||| || ||||| || Sbjct 856937 GAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAA 856996 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTC 33754 |||||| || || || || ||||| || || || | ||| ||| | || || ||| Sbjct 856997 GAAGATGCCCTCGACGGCGGCAAAAGCTATCAGCCGCTCGCCAAAGGTCGACTCGTCGTC 857056 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 |||||||| | ||||| ||||||||||| || | || || || || || ||||| Sbjct 857057 GGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 857116 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 || || || ||| || || || || || | || || ||||||| || || Sbjct 857117 GTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTA 857176 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 | ||||||| || ||||| || || ||||| || |||||||| || | ||||||| Sbjct 857177 CGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGG 857236 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 | |||||| || | ||||| || | | || || ||||| || ||||| || Sbjct 857237 GACCTGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCATCGGAAGC 857296 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTAT 34050 ||||| || |||| || || || || | ||||| | |||| | || | Sbjct 857297 AGCAAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTC-GTTGTTGAGCCGGTTCT 857355 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| || || || || | ||| | || || | ||||| || || ||||| | Sbjct 857356 CCCAGTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGG 857415 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 |||| || ||||| | |||||| || || || ||||| ||||| | ||||| Sbjct 857416 CCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 857467 >seq2 Length=3147093 Score = 96.9 bits (106), Expect = 4e-15 Identities = 429/663 (65%), Gaps = 26/663 (4%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAAT 63292 ||||| | ||| ||||||| | || | || ||| || || ||||| || || || || | Sbjct 1304406 GGACAGAACAAGGACCACTTTTCGCC-TCTTTCCACCCGCTTCATGAACAGGTCCGGCAC 1304348 Query 63293 CCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 ||| | || || || ||||||| ||| | || || ||| || || || Sbjct 1304347 CCACAATGCGTAGAACAGGTCTCTTGCTCTGTTCTCTTCCGCTCCGTGGTTTTTCCGCAG 1304288 Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 | ||||| | | ||||| | |||||| || |||| || ||||| | |||| || Sbjct 1304287 GTTCAGGAAATCGAATATATCCGCATGCCAGGGCTCCAGATAGATGGCAAACGCTCCGGG 1304228 Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 || ||||| || ||||| || | || | || ||||| || |||| || | ||| || Sbjct 1304227 ACGCTTGTTCCCACCCTGGTCGACATACCGCGCAGTGTTGTTGAAAACCCTGAGCATGGG 1304168 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGAT-ATAGCCTCCACTGGCACGAATAT 63531 || |||||| | || | || | | || | || ||||| || |||| | |||| Sbjct 1304167 AACAATACCACTGGACCTTCCCTGAGACCCAGTAATGATAGCACCCT-TGGCTCTGATAT 1304109 Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT-CGTTTTAAC 63590 || ||| ||||| || || || ||| |||| |||||| |||||| ||| || | Sbjct 1304108 TATGAATATGCAGACCGATACCTCCAGCCGTTTTCGAGATT--TGCGCACACGTCTTGAG 1304051 Query 63591 G-TGTCATAGATGCCTTCTATGCTATCATCGAT--CATGTTAAGTAGAAAACAGCTAGAC 63647 | | || ||||| || || ||| || ||| ||| | ||||||||| ||| Sbjct 1304050 GGTATCGTAGATTCCGTCGATGGAGTCG--GATGCCATAGCCACCAGAAAACAGGACGAC 1303993 Query 63648 ATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63707 | ||| | | ||| || ||||| || | || ||||||||||| || || ||| Sbjct 1303992 AGTTGTCCCTGGGGAGTACCGGCATTGAAAAGCGTGGGAGAAGCGTGTGTGAA----TTT 1303937 Query 63708 TCAGAAAG-TAGA---TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763 || || | ||| ||||||| || | | | | ||||| | ||| || || Sbjct 1303936 TCTGAGCGACAGAGCCGTGTACGTTTCCAGCACCTTGGCGATATCGTCTCCATGGATCCC 1303877 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAAT--TTTGT-TGTTTATTTT 63820 | || || ||||| | ||| || ||||| | |||||| || || | | || || Sbjct 1303876 CAGAGCCACGCGCATGAGCATATGTTGAGGACGTTCAACTATACTTCCTCCGGTTCTT-- 1303819 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 | |||||| || ||||||| || || || ||||| || ||| || | ||||| || Sbjct 1303818 -AGCAAGTACGACTTTTCCAGCGTCTTGAAGCCAAAGTACGAGTAGGAGAGGTCTCTGTC 1303760 Query 63881 GTA 63883 ||| Sbjct 1303759 GTA 1303757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817277218480