Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 309 4e-79 seq2 147 3e-30 >seq3 Length=2716294 Score = 309 bits (342), Expect = 4e-79 Identities = 597/875 (68%), Gaps = 37/875 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| ||| || || || ||| | |||||||| ||||| |||| || || Sbjct 857461 CTCTTCCCCATCCAGTACCACGAGATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTC 857402 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| ||| | ||||| ||||||| || ||| ||||||| || | | Sbjct 857401 TGGACCGCCGAGGAGATTGATCTCGGCAAGGACATGGGCGACTGGGAGAACCGGCTCAAC 857342 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 | ||||| || || |||||| | ||||||||||||| | |||||||| || Sbjct 857341 AACGACGAGCGGTTCTTCATCTCGCACGTGCTGGCCTTCTTTGCTGCTTCCGATGGTATT 857282 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || ||||| || ||| || |||||||| ||| || | || |||| |||| Sbjct 857281 GTGAACGAGAACCTGGTGGAGCGATTCTCCGGCGAGGTGCAGGTCCCCGAGGCCAAGTGC 857222 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 || ||||| ||||| |||||||| |||||| | |||||||||| |||||| ||||| Sbjct 857221 TTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTACTCGCTGCTGATC 857162 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGT 125353 |||| ||||| || || ||| | || | | | || ||||| ||||| || | Sbjct 857161 GACACATACATCAAGGACCC-CAAGGAGCGAACCTACCTGTTCAACGCCATCGAGACCAT 857103 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 || | || || ||||| | |||| | | ||||||| |||||| |||| | Sbjct 857102 CCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCGAC 857043 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473 | | ||| | ||| | || || |||||||| |||||||||||||| || || || Sbjct 857042 CTTTGGCGAGCGGCTGATAGCTTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 856983 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGA 125533 || ||||||| |||||||||||||| || ||||||||||| || || | ||||| Sbjct 856982 CGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCAACGA 856923 Query 125534 GTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT 125592 | | || || ||||||||||| || ||| ||||||||| ||| || || ||||| || Sbjct 856922 GCTCATCTCCCGAGACGAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTCGCACCT 856863 Query 125593 ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAAC---ATTGTAACCGATG 125649 |||| | || || | | | | ||| || ||||| ||| | Sbjct 856862 ----------CGAGAACCGACCCTCCAAGAAGATTGTCGAGGACGTGATTGT---CGAGG 856816 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC----GGTCAGCATGATTGGC 125705 |||| | || || || ||||| || ||||| |||| || |||| || | || Sbjct 856815 CCGTTGGTATCGAGCAGGAGTTCCTGACCGACGCCCTGCCCTGTGGTC----TGCTCGGA 856760 Query 125706 ATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG 125765 |||||| |||||| |||||| ||||||| |||||||| || || ||||| ||| | Sbjct 856759 ATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTG-----G 856705 Query 125766 TTGAT-TGG----CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 ||| | | | | |||| | |||||| ||| || ||||| || |||||| | || Sbjct 856704 TTGCTCTCGGCAACTCCAAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACA 856645 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | || || | || ||||||||||| ||||||||| Sbjct 856644 TCTCGCTGGCCGGCAAGACCAACTTCTTCGAGAAG 856610 >seq2 Length=3147093 Score = 147 bits (162), Expect = 3e-30 Identities = 379/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAG 96878 ||||||| | || || |||||||| | | ||| || || | || || || ||| Sbjct 1304154 CCAGTGGTATTGTTCCCATGCTCAGGGTTTTCAACAACACTG-CGCGGTATGTCGACCAG 1304212 Query 96879 GGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTT 96938 || || || || || || || || | ||| |||| |||| || ||||| ||||| | Sbjct 1304213 GGTGGGAACAAGCGTCCCGGAGCGTTTGCCATCTATCTGGAGCCCTGGCATGCGGATATA 1304272 Query 96939 TTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTG 96998 || || || | | |||| |||||| || |||||| |||| || ||| || Sbjct 1304273 TTCGATTTCCTGAACCTGCGGAAAAACCACGGAGCGGAAGAGAACAGAGCAAGAGACCTG 1304332 Query 96999 TTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC-AACGACGGTGGCTACTG 97057 || || ||| | |||||||| || ||||||||||||| || || || || | | || Sbjct 1304333 TTCTACGCATTGTGGGTGCCGGACCTGTTCATGAAGCGGGTGGAAAGA-GGCGAAAAGTG 1304391 Query 97058 GAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117 | | | | || || | | | || || ||| || ||||| | || ||||| Sbjct 1304392 GTCCTTGTTCTGTCCAAAGAGGGCCCCTGGGCTGGAAGACGTGTGGGGAGCGGACTTTGA 1304451 Query 97118 GGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAG-TCGATGCACGAG 97176 | |||||| || |||||| || ||||| | | | | || || | || | | Sbjct 1304452 GCAAAAGTACGAGGAGTACGAGAAAAAGGGCTTGTTCAAC-GCCCAGATCAACGCGCAGG 1304510 Query 97177 AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACA 97236 | |||| ||||| ||| | ||| |||| | || || ||| |||| ||| ||||||| Sbjct 1304511 AGCTGTTCAAGGCGATCCTCACGAGTCAGATCGAAACCGGAGGACCGTTCATGCTCTACA 1304570 Query 97237 AGGATACCGTGAATCG-CAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAAT 97295 |||| | | || | || ||| |||||| | || |||||||||||||| |||||| Sbjct 1304571 AGGACAGC-TGCAACGCCAAATCCAACCAGCAGAACCTGGGCACCATCAAGTCGTCCAAT 1304629 Query 97296 CTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCA 97355 |||||||||||||| || ||||| | || || || ||| |||||| ||| | |||| Sbjct 1304630 CTGTGCACGGAAATCGTCCAGTACTCGTCGCCCGAAGAGGTGGCAGTGTGCAATTTGGCG 1304689 Query 97356 TCGGTCAATCTGCCCAAGTTTGTAGAG 97382 || || | ||||| ||||||| ||| Sbjct 1304690 TCTGTAGCTTTGCCCGAGTTTGTCGAG 1304716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058820207160