Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq6 127 1e-24 seq2 86.0 4e-12 >seq6 Length=1972418 Score = 127 bits (140), Expect = 1e-24 Identities = 330/499 (66%), Gaps = 28/499 (6%) Strand=Plus/Minus Query 25421 CTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTC 25480 |||||| | || ||||||||| ||| ||||||||||| |||| || || | | ||| Sbjct 1597478 CTTCAGAGCGTCCACGTGATCCTTGTACACGTGAGCGTCGCCCATGGTATGAATGAGCTC 1597419 Query 25481 TCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGAT 25540 ||| || || |||| || | || ||||| || | ||| ||| ||| || Sbjct 1597418 TCCACAGTCCAGATCGGTCACCTGGGCAATCATTCGAGTCAACAGAGCATAGGAGGCAAT 1597359 Query 25541 GTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 25600 ||| ||||| || || | |||| || | |||| |||||| ||||||||||| ||| Sbjct 1597358 GTTGAAGGGAACACCCAGACCCAGATCACAT-GACCGCTGGTACAGCTGACACGACAGC- 1597301 Query 25601 CTTCGTCGCTCA----------------CGTAAAACTGACACATGGTGTAGCACGGAGGA 25644 | || ||||||| |||| ||||| || | ||| ||| |||||| Sbjct 1597300 CGTCCTCGCTCAGAGTTCTTGTACGACACGTAGAACTGGCAGAACATGTGGCAGGGAGGA 1597241 Query 25645 AGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCT 25704 ||||| || | || ||| ||||||||||| ||| ||||| | | ||| | Sbjct 1597240 AGAGCCATTTTGGACAGGTCAGCGGGGTTCCAGGCTGACAGAATGATTCGACGGTCCTGA 1597181 Query 25705 GGGTTGTCCCTGATA----AGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGA 25760 |||||| ||| | |||| | ||||| ||||||||||| ||| || | Sbjct 1597180 GGGTTGGTTTTGAGAGTGTGGATCACC--TGTTT--GAGCTGATCCACACCCTGGCCAGT 1597125 Query 25761 GTAGTCTGCCCTCA-TGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACA 25819 ||| |||| ||| ||| |||| || ||||| |||| | ||| ||||| || || | Sbjct 1597124 GTAATCTG-TGTCACAATCCTTGTATTCGGCTCCAAAATGACGCCATTGGAAGCCATATA 1597066 Query 25820 CCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGG 25879 | ||||| |||||||| || || || | || || ||| |||| ||| || ||| Sbjct 1597065 CAGGTCCCAGGTCTCCCTCACGTCTATGTCCCAATCCAGCCTTTTCCAGAAACTCCTTGG 1597006 Query 25880 AACCATTGGCGTCCCAGAT 25898 | ||||| ||||||| || Sbjct 1597005 ATCCATTTCCGTCCCAAAT 1596987 >seq2 Length=3147093 Score = 86.0 bits (94), Expect = 4e-12 Identities = 132/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 44367 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 44426 ||||||||||| | || | ||| ||| | ||| |||| || ||||||||||| ||| Sbjct 2760002 TCGTCAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCCTCGC 2759943 Query 44427 -TCACGGCGCAAAAGGGGACA--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCG 44483 |||||| || ||||| || || | | | | | ||| | ||||| ||||| ||| Sbjct 2759942 GTCACGGA-CAGAAGGGTACCATTGGTGTGACTTACAGACAC--GAGGATATGCCATTCT 2759886 Query 44484 ACAAAAACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 44543 | || | |||||||| |||||||||||||||||||| ||||||| | |||| Sbjct 2759885 CAGCCGAGGGTATCGTGCCCGATATCATCATCAACCCCCACGCCATTCCCTCGCGTATGA 2759826 Query 44544 CCGT 44547 |||| Sbjct 2759825 CCGT 2759822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340137430037493