Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 140 5e-29 seq6 120 5e-23 >seq4 Length=2565013 Score = 140 bits (154), Expect = 5e-29 Identities = 194/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | ||| | | ||||||||||| || || ||||||||||| |||| Sbjct 1878442 CGCTAAGCGACACCGAAAGATTT-TGCGAGATAACATTCAGGGTATCACCAAGCCCGCTA 1878384 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || || ||||| || ||||| | || | | |||| || |||| Sbjct 1878383 TCCGACGTCTTGCACGACGAGGTGGTGTGAAGCGAATTTCCGCCCAGATCTACGAGGAGA 1878324 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| ||||||| || | || || | ||||| | ||| || | Sbjct 1878323 CCCGAAACGTTCTCAAGTCCTTCCTCGAGTCTGTCATTCGAGATGCCGTGACCTACACTG 1878264 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||| || | ||| ||||||| || | || || || | Sbjct 1878263 AGCACGCCAAGCGAAAGACTGTCACTTCTCTCGATGTCGTCTACGCCCTCAAGCGACAGG 1878204 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | |||| ||||| || ||||| Sbjct 1878203 GCCGAACCCTTTACGGTTTCGGTGGTTAA 1878175 >seq6 Length=1972418 Score = 120 bits (132), Expect = 5e-23 Identities = 190/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | ||| ||||||||||||||| || || ||||| ||||| || | Sbjct 1664791 CGCTAAGCGACACCGAAAGAT-TCTTCGAGATAACATTCAGGGTATCACTAAGCCCGCCA 1664849 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || || || || || ||||| | || | | |||| || |||| Sbjct 1664850 TCCGACGTCTTGCGCGACGAGGAGGTGTGAAGCGAATTTCCGCCCAGATCTACGAGGAGA 1664909 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||| || |||| |||| || || | ||| |||| Sbjct 1664910 CCCGAAACGTGCTCAAGTCGTTCCTGGAGTCCGTCATCCGAGACGCCGTGACCTACACCG 1664969 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| || |||| | ||||| || | || || || | Sbjct 1664970 AGCACGCGAAGCGAAAGACGGTCACTTCTCTGGACGTTGTCTACGCTCTCAAGCGACAGG 1665029 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | | || ||||| ||| |||||| Sbjct 1665030 GCAGAACCCTCTACGGTTTCGGAGGTTAAT 1665059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075162513413