Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 120 7e-22 seq3 118 2e-21 >seq1 Length=3339266 Score = 120 bits (132), Expect = 7e-22 Identities = 133/175 (76%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||| ||| ||||| |||| || |||||||| || || ||||| || || Sbjct 1183222 GGGGAAACCCTCAACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTACCAGCACC 1183281 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACC-GCGTATTGTTCA 334299 ||| || ||||| |||||||| || || ||||| || | ||| | | || ||||| Sbjct 1183282 GTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTTGAG-TCGAAGCTGGGTTCGGTTCA 1183340 Query 334300 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 | ||||| || |||| || |||||||| || ||||| | |||||||||||| || Sbjct 1183341 GCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCTCC 1183395 >seq3 Length=2716294 Score = 118 bits (130), Expect = 2e-21 Identities = 213/309 (69%), Gaps = 7/309 (2%) Strand=Plus/Minus Query 333687 TCGGTAAGGGCGTAGTAA--CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGAT 333744 ||||| |||| |||||| || || || || ||| ||| || || |||| ||| | Sbjct 942623 TCGGTCAGGGTGTAGTAGGCCTTGCCC--TCAGGTCGCACCTTGACAAAGTCGGCCAGGT 942566 Query 333745 TTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAG 333804 | |||||||| | |||||| ||| ||||| || ||| ||| || || | Sbjct 942565 TACCCTTGTAGTAGACCAGCTTCTTGTTC---TCGTAGTGAGCAATGTCGGTACAGACGG 942509 Query 333805 CGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCA 333864 |||| ||||| |||||||||||||| ||||||| | | | ||| || || | || Sbjct 942508 CGTCCAGGAAGCCGGAGTCGTGTGAAACAATCAGAGAGGTGATGTCGGTATGGGCCACCA 942449 Query 333865 GGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAA 333924 |||| || ||||||| | ||||| |||| |||||||| || ||||| || || | Sbjct 942448 GGTAGTCCTGCAGCCACTTGACGTTGCCCACATCCAGATGGTTAGTAGGCTCATCGAGCA 942389 Query 333925 GTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTC 333984 | || | | || |||| |||||| || || || || | || ||||| ||||| |||| Sbjct 942388 GCAGAATGTCGGCCTTCATGAGCATGGCTCGGGCCAGCTCCAGCTTCATCTTCCATCCTC 942329 Query 333985 CTGAAAGAG 333993 | || |||| Sbjct 942328 CAGACAGAG 942320 Score = 100 bits (110), Expect = 6e-16 Identities = 548/865 (63%), Gaps = 25/865 (3%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||||||| | || || ||| | ||||| |||||||| | ||| | || ||| Sbjct 857458 TTCCCCATCCAGTACCACGAGATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGG 857399 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAAC---TCAAT 242991 ||| ||||||| || ||| | ||| | | ||||||| ||||| | |||| Sbjct 857398 ACCGCCGAGGAGATTGATCTCGGCAAGGACATGGGCGACTGG---GAGAACCGGCTCAAC 857342 Query 242992 GACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATT 243051 ||||||| || |||||| ||| | || | || || || | |||||||||||| Sbjct 857341 AACGACGAGCGGTTCTTCATCTCGCACGTGCTGGCCTTCTTTGCTGCTTCCGATGGTATT 857282 Query 243052 GTGATGGAAAATCTGCAG-ACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCA 243110 |||| || || ||| | | | | | | | | | || ||| || ||||| | Sbjct 857281 GTGAACGAGAACCTGGTGGAGCGATTCTCCGGCG-AGGTGCAGGTCCCCGAGGCCAAGTG 857223 Query 243111 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTAT 243170 || || | | ||| | | | || ||||| || ||| || | || || || Sbjct 857222 CTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTACTCGCTGCTGAT 857163 Query 243171 CGACGCGCTTATTTCAGATGAAC---AAGAGCGAAACGAGCTTTTCGACGCCATCGAAAA 243227 |||| | || ||| | || | | ||||||| | | || ||| |||||||||| | Sbjct 857162 CGACACA--TACATCA-AGGACCCCAAGGAGCGAACCTACCTGTTCAACGCCATCGAGAC 857106 Query 243228 CATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA---GAACCCG-GTA 243283 ||| || | | || ||||| | ||||| | |||||| | || || || Sbjct 857105 CATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGTC 857046 Query 243284 AATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGA 243343 | | || || ||||| || | || | | ||| || || || | || ||||| Sbjct 857045 GACCTTTGGC-GAGCGGCTGATAGCTTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCT 856987 Query 243344 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 243403 ||| | ||||||| ||||| ||| |||| | ||||| |||||| | || | Sbjct 856986 CGTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCA 856927 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA 243463 ||||| ||||| || |||||||| || ||| | || | || | | || Sbjct 856926 ACGAGCTCATCTCCCGAGACGAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTCGC 856867 Query 243464 AGCTCCAGAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCAGTTG 243520 | ||| ||||| | ||| | | | | | ||| | | | || || || |||| Sbjct 856866 ACCTCGAGAAC---CGACCCTCCAAGAAGATTGTCGAGGACGTGATTGTCGAGGCCGTTG 856810 Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTG 243580 | ||| |||| ||| | |||||| | || || | || | || |||||| | Sbjct 856809 GTATCGAGCAGGAGTTCCTGACCGACGCCCTGCCCTGTGGTCTGCTCGGAATGAACGCCA 856750 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 | |||||| | |||||||| || || || |||||||| | | | || || || | Sbjct 856749 AGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCTCTCGGCAACT 856690 Query 243641 AGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGA 243700 || || |||||||||| |||||||| | ||| |||||| ||| ||||| || | Sbjct 856689 CCAAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCA 856630 Query 243701 AAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||||||||| ||||| || Sbjct 856629 AGACCAACTTCTTCGAGAAGCGGGT 856605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879420643350