Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 105 6e-18 seq11 93.3 4e-14 seq8 93.3 4e-14 >seq4 Length=2565013 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | || || || ||||| || || ||||| ||||| || || || Sbjct 110116 ATACCTCCTCGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 110175 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | |||| ||| ||||||||||| Sbjct 110176 GAAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGG 110235 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || |||| || | || | ||||||||||||||| Sbjct 110236 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTC 110294 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCA 45339 || ||||| || | || ||||| || || || || ||||| ||||||| Sbjct 110295 CACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 110344 >seq11 Length=586936 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || |||||||| ||||| || || ||| | Sbjct 306107 CCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAG 306048 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || || | || || || ||| | || | ||| ||||||||||| || Sbjct 306047 AGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 305988 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || || |||| || | || | ||||| ||||||||||| Sbjct 305987 ATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATAGTGTCAGAAGACTCGAC 305929 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || || ||||| || || || || ||||| ||||| Sbjct 305928 CTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTGCAT 305881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || || ||||| ||||| || || ||| Sbjct 305882 ATACCACCTCGGAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 305823 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | || | || || | || || || ||| | || | ||| |||||||||| Sbjct 305822 --GACAGAGTTCGTCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCG 305765 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||| || || || || ||||| || |||| || | || | ||| ||||| ||| Sbjct 305764 GGGGAATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCAATGGTATCGGAGGAC 305706 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || | || || || || || || || ||||| || ||||| Sbjct 305705 TCAACCTCGAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 305653 >seq8 Length=911341 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || || ||||| || || || ||||| ||||| || || || Sbjct 549461 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 549520 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || || | || || || ||| | || | ||| ||||||||||| ||| Sbjct 549521 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 549580 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || || |||| || | || | ||||||||||||||| || Sbjct 549581 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 549639 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || ||||| || || || |||||||| ||||| Sbjct 549640 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 549687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002968348360