Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 214 2e-50 seq3 136 5e-27 >seq4 Length=2565013 Score = 214 bits (236), Expect = 2e-50 Identities = 1130/1781 (63%), Gaps = 45/1781 (3%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| ||||| || ||| | | ||| ||||||||||| || |||||||| | Sbjct 2495637 TGAACTGGATGGGGGCGGCAGCAGCCATGGTTCGCAGGTAGTACATACCGGTCTTGAGAC 2495578 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 ||| ||||||| | || | ||||| || | | |||| | || || | ||| Sbjct 2495577 CCTTCTTCCAGCCGTAGAAGTGCATGGAAGTGAGCTTGCCCATGGTGGGGTCCTTGATGT 2495518 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||| | ||||| || || |||||| | || || || ||||| || || | Sbjct 2495517 GGATGTTGAGGGACTGGGACTGGTCAATGAAGGGGGATCGGTCGGCAGCCATCTCGATGA 2495458 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 |||| || |||||||| || |||| |||| ||| || || | ||||| | Sbjct 2495457 TTCGCTTCTGAGAAATCTCCCACACGGTCTTGTACAGGTCCTTGATCTCCTGGGGGATGT 2495398 Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTG 115822 ||| || || | || || || | | ||| || | | |||||| || Sbjct 2495397 TGGGGATGTTCTGCACGGATCCGT-TGTC--GGCCACGATTCGGTTCTTCATGGTCTCGT 2495341 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAAC 115878 ||| ||||||| || || |||| | | ||| | ||||||| ||| Sbjct 2495340 TCCACAGACCAACCTCAACCAGGTCCTTGAGCAGCCAGGGG----TTGACAATCTGGAAC 2495285 Query 115879 TCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 ||||| || || |||| ||| || ||||||| ||||| ||||| |||||||| || Sbjct 2495284 TCACCAGCAAGCACTCGTCG-AGAGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCGTT 2495226 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 | || | || || | ||||| || || |||||||| |||| || || ||| || Sbjct 2495225 GAAGCCGAGAATCTGAGAAGTGGAAGCGGTAGGCATGGGGGCCACCAGCAGCGAGTTTCG 2495166 Query 115998 GAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTC 116057 | || | | | || ||||||| ||||||| || || |||| | Sbjct 2495165 CATTCCGGTCTTCATGATCTTGGCCTTGAGATCGTCCCACTCCCAG---AGCTCGGAGGG 2495109 Query 116058 ---CCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 116114 | | | ||||| |||||||| ||| ||| | ||| || || || |||| || || Sbjct 2495108 AGTCACGTTCCACAGGTCAAACTGCAGGTCACCCTTGGAGGCAGGAGAGCCCTGGAAGGT 2495049 Query 116115 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 116174 ||| || | || || | |||| ||| | ||||| | ||| |||| || || Sbjct 2495048 CTCGTAAGCACCGTCCTCAAGGGCCATCTCGTAAGAAGCCTCAACGGCACCGTGGTAGAT 2494989 Query 116175 TGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA 116234 ||||| || || | || | ||||||||| ||||| || || | || ||| Sbjct 2494988 GGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACTCGAAGGGCAGTCGGAG 2494929 Query 116235 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 || || ||| || ||||| |||||||| || |||| || || |||| ||| || Sbjct 2494928 GGCCATGAAGGTATCAGCCAGACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTT 2494869 Query 116295 AGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 ||||| || ||| || || || | || | || || | || || || Sbjct 2494868 GGACTTCTTGGC---CTCAGGGACAGGGTAGTAGTTTCGGTCAATGATGGCGTTGAGGTT 2494812 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGA--GTCTC 116408 | | ||||| | || || || ||||| | | | || | | | | ||||| Sbjct 2494811 TCGCACAATCACCTTGGCAATATCGTGCAGCTTCTTGAAGTCGTAGAAGGAGTTGGTCTC 2494752 Query 116409 TTC---ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 116465 || | ||||| | | || || ||||| || ||||| || || |||| | |||||| Sbjct 2494751 GTCTCGAGTGACAAAGGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATC 2494692 Query 116466 CTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTT 116525 | || |||||| | ||| || ||||| || ||| ||| ||||| |||| ||| Sbjct 2494691 AGGAGAAGAGTACTCGACAATCTCGCAACACAGGTTGGAAGACTTGATGGTACCCAGGTT 2494632 Query 116526 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 ||| || || |||||| ||| || || |||||||||||||| | || | || | ||| Sbjct 2494631 CTTCTGGTTGGACTTTCGGTTGCAGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGACTC 2494572 Query 116586 CGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTG-GCT 116643 || ||| | | ||||| | ||| | | || | ||| || | || ||| | || Sbjct 2494571 GGTCTGGCAGTCCAGAATGTGGTACCACAGCTTCTG-GGCAGGGATGGT-TCGTCGACCT 2494514 Query 116644 CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAG 116703 || ||||||| |||||||| ||| || || ||||| ||||| | || | Sbjct 2494513 CGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCTTGAACTCGTCACCGTAGACGTCATCG 2494454 Query 116704 AGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 116763 || || || || | || || | ||||| ||| | | || ||| || |||| | Sbjct 2494453 AGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCTCGACTCGCTCC 2494394 Query 116764 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 116823 ||||| ||||| || |||||||| ||| ||| ||||| || ||| || || | Sbjct 2494393 ATGAACAGGTCGGGAATCCAGAGAGCCAGGAACAGATCTCGGGCTCGAATCTCCTCCTTA 2494334 Query 116824 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 116883 || || || |||| ||| | || || | || || ||||||| || ||||||||| Sbjct 2494333 CCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGACGTCATCGTGCCAGGGCTCCAGGTAC 2494274 Query 116884 ACCGCGATTGACCC--CTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTT 116939 | || | | || | || | | || |||||| || || | || || ||| Sbjct 2494273 ATGGCAAAGGCTCCGGGTCGCTTGTTG-CCTCCCTGGTCGACGTATCGAGCGGTGTTGTT 2494215 Query 116940 AAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGA 116999 | || || ||||| || | |||||| | || || || || || ||| || Sbjct 2494214 GTAGACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTGGTTCCGGCAATGTAGGA 2494155 Query 117000 CTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 117059 | |||||| || | ||||||| || ||| ||||| || || |||| ||||| | Sbjct 2494154 TCCGGTGGCTCGGATGTTGTGGATGGACAGACCGATACCTCCAGCGGACTTGGAGATGAG 2494095 Query 117060 TGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 117119 || || | |||| || ||||||| || ||||| ||||| |||| | || || Sbjct 2494094 AGCACAAGTCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAG 2494035 Query 117120 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 117179 ||| || |||||| || ||| || || || |||||| | ||||| || | ||||| Sbjct 2494034 GAAACACGACGACATCTGGGGCTGGGGGGTTCCTGCGTTGTACAGGGTAGGGGAAGCGTG 2493975 Query 117180 GATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCC 117238 | |||| ||| ||| ||||| | | ||||||||| | | | || ||||| || | Sbjct 2493974 GGTGAA-GTACTTTTGAGACATGTAGTTGTAGGTCTCAATGGCTCGGGCAATGTTGTCGC 2493916 Query 117239 CGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 |||| ||||||| || || ||||| | ||| | |||||| Sbjct 2493915 CGTGGATACCGACAGACACTCGCATGATCATCTGCTGGGGT 2493875 >seq3 Length=2716294 Score = 136 bits (150), Expect = 5e-27 Identities = 349/521 (67%), Gaps = 18/521 (3%) Strand=Plus/Plus Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300 |||||||||||||||||||| ||||| || | || ||| |||||||| || || || Sbjct 856605 ACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTCTCCATGAAGTCGAAG 856664 Query 127301 GGGTTCTTTGAGTTCCAAA--TTG---TTGGC-ACCCCAATCTGTTTGAGGAGACGATCC 127354 ||||| | ||||| | | ||| ||| | | ||| | || ||||| || Sbjct 856665 GGGTTGGTGGAGTTGTAGACCTTGGAGTTGCCGAGAGCAACC------AGCAGACGGTCG 856718 Query 127355 GAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG 127414 | ||| |||||||||||| |||| || | |||||| |||| || ||| || Sbjct 856719 GCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGCAGACCACAGGGC 856778 Query 127415 AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATA 127474 || ||||| | |||| ||| ||| || | || || || | | | | | | | Sbjct 856779 AGGGCGTCGGTCAGGAACTCCTGCTCGATACCAACGGCCTCGACAATCACGTCCTCGACA 856838 Query 127475 GTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAG-CAAACTCTTGGT 127532 | | | |||| || | | || | |||||| |||| |||| || || Sbjct 856839 ATCTTCTTGGAGGGTCGGTT-CTCGAGGTGCGAGAAGAGCAG-ACAGGCAAAGTCGGTGT 856896 Query 127533 GGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCC 127592 | ||||||||||| ||||||||||| || || |||||| || || ||||||||||| | Sbjct 856897 GCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTC 856956 Query 127593 GCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACG 127652 ||||||| | |||||| || | || ||||| ||||||||||| ||||| || | Sbjct 856957 GCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCGG 857016 Query 127653 CGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA-AACCACTTCATCGCC 127711 | || || | || |||||| |||||| || | | || | | |||||| | |||| Sbjct 857017 CAAAAGCTATCAGCCGCTCGCCAAAGG-TCGACTCGTCGTCGGAGATCCACTTGAGCGCC 857075 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || | ||||| |||| ||| || |||| ||||| ||| || Sbjct 857076 CAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 857116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506885577560