Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 408 4e-109 seq4 123 2e-23 seq11 120 3e-22 seq8 111 2e-19 >seq3 Length=2716294 Score = 408 bits (452), Expect = 4e-109 Identities = 654/928 (70%), Gaps = 17/928 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| || || || ||| |||| ||||| || || || || || || | Sbjct 856577 CATGACGCCGGCCTTCTGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 856636 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707 || || ||| | ||| || || |||||||||| | ||||||| ||||| |||| Sbjct 856637 CAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGAGTTGCC 856696 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || || | || ||||| | |||||| || ||||| ||||| || ||||| | || || Sbjct 856697 GAG-AG--CAACCAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGC 856753 Query 132767 AATTAAGTCCCAGCAGACGCACCGG-CAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 || | ||| ||||||| ||| || ||| || ||||| || || |||||||| | Sbjct 856754 G-TTCATTCCGAGCAGAC-CACAGGGCAGGGCGTCGGTCAGGAACTCCTGCTCGATACCA 856811 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 || || ||| | | ||| || | | | || || | | | | ||| | Sbjct 856812 ACGGCCTCGACAATCACGTCCTCGACAATCTTCTTGGAGGGTCGGTTCTCGAGGTGCGAG 856871 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 || | || || ||||||||| |||| |||||||| | ||| ||||| |||||| | Sbjct 856872 AAGAGCAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAG 856931 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || || | |||||||||||| || || || |||||||| || |||| |||||| ||| Sbjct 856932 AAGGTGAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCG 856991 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 || ||||||| |||||||||||| || ||||| | ||| |||||||| || || | || Sbjct 856992 GAGAAGAAGATGCCCTCGACGGCGGCAAAAGCTATCAGCCGCTCGCCAAAGGTCGACTCG 857051 Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 | | || |||||| |||||||| |||||||| | |||| ||| || || || ||| Sbjct 857052 TCGTCGGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCG 857111 Query 133126 ATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGG 133183 |||||||| ||| | | || ||| || | || | | ||| |||||||| || Sbjct 857112 ATGGCGTTGAAC--AGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCA 857169 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 ||| ||| |||||||||| | ||||||||| ||| || |||||||| |||||| | Sbjct 857170 GCGAGTACGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGG 857229 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 ||||| |||||||| || | ||| ||||| ||||| || ||||| || || || | Sbjct 857230 CCTCGGGGACCTGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCAT 857289 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363 || || || || ||||||||||||||| |||||| ||||||| || ||| | | Sbjct 857290 CGGAAGCAGCAAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTCGTTGTTGAGCC 857349 Query 133364 G---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 | ||||||||||| | |||||||| || || | ||||||| ||||||| || || | Sbjct 857350 GGTTCTCCCAGTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAG 857409 Query 133421 CCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACC 133480 ||||||| || |||||||| ||| || || || || ||||| || | |||||||| Sbjct 857410 CCTCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAACC 857469 Query 133481 GGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 ||||| |||| || | ||||||||| Sbjct 857470 GGCGGTGGTTCTCCTTGAGCAGCGGCTC 857497 >seq4 Length=2565013 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| || || || || || || ||||| ||||||||| |||| || ||| | ||| Sbjct 110344 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 110285 Query 38305 ACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 110284 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 110226 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 110225 CAGCGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAAC 110166 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| | || ||||| Sbjct 110165 ATCCAGAAGGAGTCCACTCTGCACCTTGTCCTGCG 110131 >seq11 Length=586936 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| |||| |||||| | | Sbjct 305881 ATGCAGATTTTCGTGAAGACCCTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCT 305940 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| ||||| ||||| || ||| | ||||| Sbjct 305941 GACACTATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 305999 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || ||||| || |||| || |||||| ||||||||| Sbjct 306000 GCAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGACGGACGAACCCTCTCCGACTACAA 306059 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| |||||| | || || || | ||||| || | |||| |||| Sbjct 306060 CATCCAGAAGGAATCCACTCTCCACCTTGTGCTCCGACTCCGAGGTGGCC 306109 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| |||| || ||| || || Sbjct 305653 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCCTCC 305712 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | ||||| ||||| |||||| | ||||| Sbjct 305713 GATACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCA 305771 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || ||||| || |||| || || || ||||||||| Sbjct 305772 GCAGCGACTTATCTTCGCTGGTAAGCAGCTCGAGGACGGACGAACTCTGTCCGACTACAA 305831 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || ||| |||| || || Sbjct 305832 CATCCAGAAGGAGTCTACTCTCCATCTGGTCCTCCG 305867 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||||||| | ||||| ||||| ||||||| ||| || || ||||| || Sbjct 304958 GACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTCATTTTCGCCGGTAAGCAGCTCGAG 305017 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| || || || ||||||||||||||| ||||| | || || ||| |||| || Sbjct 305018 GACGGACGAACTCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTCATCTGGTTCTC 305077 Query 38457 CG 38458 || Sbjct 305078 CG 305079 >seq8 Length=911341 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || || || || || || || || || || |||||| | || || ||| | Sbjct 549689 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 549630 Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | |||| | || || |||| ||||| |||||||||||| | ||| Sbjct 549629 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 549571 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || |||| || ||||| |||||| Sbjct 549570 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 549511 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| | || || ||| | || ||||| Sbjct 549510 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 549473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172543661440