Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6 194 1e-44 seq2 86.0 5e-12 >seq6 Length=1972418 Score = 194 bits (214), Expect = 1e-44 Identities = 408/605 (67%), Gaps = 25/605 (4%) Strand=Plus/Minus Query 29799 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 29858 |||||| | |||||||||||| ||| ||||||||||| |||| ||| || | | ||| Sbjct 1597478 CTTCAGAGCGTCCACGTGATCCTTGTACACGTGAGCGTCGCCCATGGTATGAATGAGCTC 1597419 Query 29859 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29918 ||| || || |||| || || || ||||| || | |||| ||| ||| || Sbjct 1597418 TCCACAGTCCAGATCGGTCACCTGGGCAATCATTCGAGTCAACAGAGCATAGGAGGCAAT 1597359 Query 29919 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 29978 ||| ||||| || || || |||| || | |||| |||||| ||||||||||| ||| Sbjct 1597358 GTTGAAGGGAACACCCAGACCCAGATCACATGACCGCTGGTACAGCTGACACGACAGCCG 1597299 Query 29979 TCCGTCGCTCA----------------CGTAAAACTGACACATGGTGTGGCACGGAGGAA 30022 ||| ||||||| |||| ||||| || | ||||||| ||||||| Sbjct 1597298 TCC-TCGCTCAGAGTTCTTGTACGACACGTAGAACTGGCAGAACATGTGGCAGGGAGGAA 1597240 Query 30023 GAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTG 30082 ||||||| | || ||| |||||||||||| ||| ||||| || | ||| | | Sbjct 1597239 GAGCCATTTTGGACAGGTCAGCGGGGTTCCAGGCTGACAGAATGATTCGACGGTCCTGAG 1597180 Query 30083 GGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 30139 ||||| | ||| || || ||| | |||| ||||||||||| ||| || | || Sbjct 1597179 GGTTGGTTTTGAGAGTGTGGATCAC--CTGTTTG-AGCTGATCCACACCCTGGCCAGTGT 1597123 Query 30140 AGTCTGCCCTCATG-TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACC 30198 | |||| ||| ||| |||| || ||||| ||||| | ||| ||||| || || || Sbjct 1597122 AATCTGTG-TCACAATCCTTGTATTCGGCTCCAAAATGACGCCATTGGAAGCCATATACA 1597064 Query 30199 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30258 ||||||||||||||||| || || | || || ||| |||| ||| || |||| Sbjct 1597063 GGTCCCAGGTCTCCCTCACGTCTATGTCCCAATCCAGCCTTTTCCAGAAACTCCTTGGAT 1597004 Query 30259 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 30318 || || ||||||| || | | || ||| |||| ||| || || | || Sbjct 1597003 CCATTTCCGTCCCAAATATGAATGTTTTTTTCGCTCAGCTTCTTGCCGTCGGTACATCCG 1596944 Query 30319 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 30378 || ||||| || |||||||||| ||| | |||| |||| ||| || || | Sbjct 1596943 GCCACAAACCAGAGAAGCTCCTCCAAAACGCCTCGGTAAAAAACCCGCTTTGTGGTCAAC 1596884 Query 30379 AGGGG 30383 ||||| Sbjct 1596883 AGGGG 1596879 >seq2 Length=3147093 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 52015 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52074 ||||||||||| | || | ||| ||| | ||| |||| || ||||||||||| ||| Sbjct 2760002 TCGTCAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCCTCGC 2759943 Query 52075 -TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCG 52131 |||||| || ||||| || || | | | | | ||| | ||||| ||||| ||| Sbjct 2759942 GTCACGGA-CAGAAGGGTACCATTGGTGTGACTTACAGACAC--GAGGATATGCCATTCT 2759886 Query 52132 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGA 52191 || || | |||||||| |||||||||||||||||||| |||| || | |||| Sbjct 2759885 CAGCCGAGGGTATCGTGCCCGATATCATCATCAACCCCCACGCCATTCCCTCGCGTATGA 2759826 Query 52192 CCGT 52195 |||| Sbjct 2759825 CCGT 2759822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617395818893