Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 206 4e-47 seq4 154 2e-31 seq1 113 7e-19 seq2 96.9 5e-14 >seq3 Length=2716294 Score = 206 bits (228), Expect = 4e-47 Identities = 247/332 (74%), Gaps = 5/332 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| ||| ||||||||||||||| || ||||| Sbjct 856901 ACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCGCTT 856960 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| ||| ||||| ||||||||||||||||||||||| Sbjct 856961 CTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAA 857020 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | ||||||||| |||| || | | || | | ||||||||| | |||||| Sbjct 857021 AGCTATCAGCCGCTCGCCAAAGGT---CGACTCGTCGTCGGAGATCCACTTGAGCGCCCA 857077 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578 || ||||| ||| | | |||| | || ||||||||| || |||| ||| | || Sbjct 857078 GTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTC-GCT 857136 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | |||||||||| ||| |||||||| || |||||||| || || ||||||||||| | Sbjct 857137 CCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACGTTTCCGAGTGGATGTTCT 857196 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAGTTG 794670 | || |||||||||||| || ||||| ||| Sbjct 857197 CCATCATGATCTGGAAGCCGTAGAAGCACTTG 857228 Score = 163 bits (180), Expect = 4e-34 Identities = 204/279 (73%), Gaps = 3/279 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || ||| |||||||||| || || ||||| ||| || | |||||||||| | Sbjct 857220 AAGCACTTGGCCTCGGGGACCTGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTC 857279 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || || || ||| || || || ||||| || |||||| ||| ||| ||||||||| Sbjct 857280 ACAATACCATCGGAAGCAGCAAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTCG 857339 Query 796261 TCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 | | ||||| | |||||| | || |||| |||||| || | ||||||||||||| Sbjct 857340 TTGTTGAGCCGGTTCTCCCAGTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTC 857399 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAAC 796377 || || || ||||||||||| |||||||||| ||| ||| ||||| |||||||||| Sbjct 857400 CAGAAAGAAGCCTCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAG 857459 Query 796378 AGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || ||||| || | ||||||| |||||||||||| Sbjct 857460 AGCACAAACCGGCGGTGGTTCTCCTTGAGCAGCGGCTCG 857498 Score = 140 bits (154), Expect = 5e-27 Identities = 233/330 (71%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| || ||| ||| ||| |||||| |||||||||||||| | | Sbjct 856579 TGACGCCGGCCTTCTGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCA 856638 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| | |||| ||| | |||| Sbjct 856639 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGAGTTGCCGA 856698 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| ||||||||||| || |||||||||||||||||||| |||||||| Sbjct 856699 GAGCAACCAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCA 856758 Query 794071 TGCCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 | |||| || |||| |||||| | ||| | | ||||| | |||||| | |||||| Sbjct 856759 TTCCGAGCAG-ACCACAGGGCAGGGCGTCGGTCAGGAACTCCTGCTCGATACCAACGGCC 856817 Query 794130 TCGATGATGATCTGCCTGGGCA--CGTC--GGACGACGGCTTGTCGACGAGCATCGTGTA 794185 |||| || | | ||| | || | || ||| | | || |||| | | || | | Sbjct 856818 TCGACAATCA-CGTCCTCGACAATCTTCTTGGAGGGTCGGTTCTCGAGGTG---CGAGAA 856873 Query 794186 GAGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 |||||| |||||||||||| |||||||| Sbjct 856874 GAGCAGACAGGCAAAGTCGGTGTGCAGACC 856903 Score = 138 bits (152), Expect = 2e-26 Identities = 223/315 (71%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 429508 CGCTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGA 429567 |||| ||| ||| |||| || |||||||||||| | |||||||||| | | | Sbjct 1819432 CGCTGCAGTACGGCTGGAAGGTGGAGCGCCACCTGATGGACAACGACCCCGTGCTGTTCA 1819373 Query 429568 ACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCG 429627 |||| ||||||||||| || | ||| ||| | |||| |||| | |||||| Sbjct 1819372 ACCGACAGCCGTCGCTGCATAAAATGTCCATGATGGCCCACCGGGTGCGGGTCATGCCGT 1819313 Query 429628 G-TCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGC 429686 ||| |||||||||||||||||| | || ||| ||||||||||||| || ||||| Sbjct 1819312 ACTCG-ACCTTCCGGCTCAACCTGTCGGTCACGTCGCCCTACAACGCCGATTTCGACGGA 1819254 Query 429687 GACGAGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGA--AGTCGC-CCAC 429743 ||||| ||||||||||| || || ||||| ||| | | || ||||| ||||| | Sbjct 1819253 GACGAAATGAACCTGCATGTTCCTCAGTCCGAGGAGACGCGGGCCGAGCTGTCGCAGCTG 1819194 Query 429744 ACCATGGGCGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTC 429803 |||| ||| | || || ||||| || ||| ||||||||||| |||| || | Sbjct 1819193 TGCATG---GTGCCTCTGCAGATTGTGTCCCCTCAGTCCAACAAGCCCGTCATGGGCATT 1819137 Query 429804 GTGATGGACGCCCTC 429818 ||| |||| | ||| Sbjct 1819136 GTGCAGGACACGCTC 1819122 Score = 118 bits (130), Expect = 2e-20 Identities = 389/598 (65%), Gaps = 10/598 (2%) Strand=Plus/Plus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 ||||||||||| ||| || || ||| |||||| ||| ||| |||||| || || Sbjct 1435311 AGATCAATCTTAGAGTTGGGATCAGAGGCAGACATCTTACCGCCCTGGGTGAGACCAGGA 1435370 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGC 2411502 |||| ||||| | || ||| ||||| |||||| | | | |||| || Sbjct 1435371 ACCATAGGGTTCATCATGTGTGCTCGCTTCTTGTAGCCGATAGAGGTGAGGTTTTCCTCA 1435430 Query 2411503 GCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 2411562 |||| | | |||||||| |||||||| || || ||||| ||||| ||| | |||| | Sbjct 1435431 GCAAGGACGAAGATCTTTCGCTGGTCAACACCACCGAACTGAGCGTCAACGCCCAGGTAC 1435490 Query 2411563 TGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCC 2411622 | |||||| || |||||||| || ||||| | || | ||| | ||||| | || Sbjct 1435491 TCCTCGTCAAGCGCCTGCATCAGAGGGTAAATAAGACCGGAAAGCAGGGGGTTATCGACC 1435550 Query 2411623 ATCTTGACCACCTGGGCGGCGG--CCTTTTGCGCCGTGCCGACGGTCACGCGCGCCGTCA 2411680 ||||| || | ||| | | | || ||| ||| ||| | || || | | Sbjct 1435551 TGTTTGACGACATCGGCACCAGCTCGCTTGGCGTCGT--TGACAGAGACTCGGTTGGAGA 1435608 Query 2411681 GGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTA--ATCGCTGCCGCGCACAAA 2411738 | || || || | ||||| |||||| ||| | | |||| ||| || || Sbjct 1435609 GCTTGAACAGATCCATGGTGTACTCGGCGCTCAGCTCGAAGGATCG--GCCAATGACGAA 1435666 Query 2411739 TTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTA 2411798 | || || || ||||| || || |||| || |||||||| ||||||| Sbjct 1435667 TGTCAGCTTGTCGAGAGGGACACCGATAGAACGGAGAATAGCCTTGATCATGTACTCGTA 1435726 Query 2411799 CCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTG 2411858 | || ||||||| || || ||| || | ||| ||||| ||| ||| || Sbjct 1435727 GTACTGGACTCGGTGCTGAACCAGCTCCAGAGGGGCCTTCATGTTGTCAAGGAAGGCATG 1435786 Query 2411859 CACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAA 2411918 || |||||| | |||||| | ||| ||| || || || |||||||| | || Sbjct 1435787 CAAGTCGGCGAGCAGGATCTTGACCTCACAGCCAGCAGCCAGGAAGTCGGCAATCTTGGT 1435846 Query 2411919 GATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975 ||||||||||||||||| ||| |||||||| || || || || || ||||| || || Sbjct 1435847 CATGGGCACAAAGTAGCCACAG-TGGGGCTTTCCAGTTGGTGCAGTTCCCCAGTAGAT 1435903 >seq4 Length=2565013 Score = 154 bits (170), Expect = 2e-31 Identities = 337/505 (67%), Gaps = 15/505 (3%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| ||| |||| || ||||||||||| | |||||||| Sbjct 2494241 CTGGTCGACGTATCGAGCGGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGA 2494182 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||||| || | ||| || | ||||| || | || Sbjct 2494181 GGTACCGTTGGTTCCGGCAATGTAGGATCCGGTGGCTCGGATGTTGTGGATGGACAGACC 2494122 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || || | |||||||||||| || || | || || || ||||||||||| || Sbjct 2494121 GATACCTCCAGCGGACTTGGAGATGAGAGCACAAGTCTTGAGGGTGTCGTAGATGCCGTC 2494062 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| |||||| ||||||||| | || || |||||||| | || || | | || || Sbjct 2494061 GATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCC 2494002 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 || ||| | || || || | || ||| | ||| ||| |||||| | |||||| Sbjct 2494001 TGCGTTGTACAGGGTAGGGGAAGCGTGGGTGAAGTACTTTTGAGACATGTAGTTGTAGGT 2493942 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 | | | || || | | || |||| || | | |||| | || Sbjct 2493941 CTCAATGGCTCGGGCAA-----TGTT----GTCG------CCGTGGATACCGACAGACAC 2493897 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 ||||||||||| | ||||||||||||| | || ||| || || |||||||| Sbjct 2493896 TCGCATGATCATCTGCTGGGGTCGCTCGGCAACAGCGCCGTTGACTCGCAGCAGGTAGGC 2493837 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 || ||||||| | ||||||||| ||||| | ||| || |||| | | ||||| Sbjct 2493836 TCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAATGGC 2493777 Query 2074020 GGCGTCGAGGGCCTCCTTGTGCGCC 2074044 ||| ||| | ||| || |||| Sbjct 2493776 TCCGTTGAGCTCGTCCGCGTTCGCC 2493752 >seq1 Length=3339266 Score = 113 bits (124), Expect = 7e-19 Identities = 171/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||| || || ||||| || | ||||||| ||||||| || ||| | | Sbjct 441823 GTACTTGGCAACAGCTCGAGTACCGTCACCGGTGGCGTGCTTGGCCAGCTCTCCGGGGAG 441764 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || || || |||||||||||||| || | ||| ||| |||| | || | Sbjct 441763 GATAAGTCGGACAGCGGTCTGGATCTCTCGAGAAGTGATGGTGGACTTCTTGGT-GTAGG 441705 Query 1485591 CGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | |||||||||| | | || |||| || |||||||| || ||||||| Sbjct 441704 TGGCAAGCTTGGAGGCCTCGGTGGCAACTCGCTCGAAGATATCGTTGACGAAGGAGTTCA 441645 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | | | ||||||| || ||||||||| |||||| |||||||||| Sbjct 441644 TGATGGACATGGCTCGGGTGGAGATACCAGTGTCGGGGTGGGTCTGCTTCAGCACCTTGT 441585 Query 1485710 A 1485710 | Sbjct 441584 A 441584 Score = 109 bits (120), Expect = 9e-18 Identities = 123/162 (76%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 2035593 TGGGACAAGGCCTTT-TGCGAGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGC 2035651 |||||| | |||| ||| |||| ||||| | || |||||| | ||||| |||| Sbjct 2836478 TGGGACTACAACTTTCTGC-AGGTGGACCAGGAGATGCTGTTTGAGATCATCCTGACCGC 2836536 Query 2035652 CAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTAT 2035711 || ||||| || |||||||| || || || |||| |||||||||||||||||| | || Sbjct 2836537 AAATTACCTGGATATCAAGCCTCTGCTGGACGTGGGCTGCAAGACCGTGGCCAACATGAT 2836596 Query 2035712 CAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 |||||||||| | |||||||| || || ||||| ||||| Sbjct 2836597 CAAGGGCAAGACCCCCGAGGAGATTCGACGAACCTTCAACAT 2836638 >seq2 Length=3147093 Score = 96.9 bits (106), Expect = 5e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||||||| ||||||||| || |||||||| |||| |||| | |||||||||||||| Sbjct 1304661 GGCGACGAGTACTGGACGATTTCCGTGCACAGATTGGACGACTTGATGGTGCCCAGGTTC 1304602 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 ||||||||| | |||| | |||||||| |||||| | || | || || ||| Sbjct 1304601 TGCTGGTTGGATTTGGCGTTGCAGCTGTCCTTGTAGAGCATGAACGGTCCTCCGGTTTCG 1304542 Query 2071684 ATCTGCGCCGTGACGATGGCC 2071704 ||||| ||||| ||| ||| Sbjct 1304541 ATCTGACTCGTGAGGATCGCC 1304521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242038642999