Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 322 7e-82 seq4 154 2e-31 seq1 98.7 1e-14 seq2 89.7 7e-12 >seq3 Length=2716294 Score = 322 bits (356), Expect = 7e-82 Identities = 417/566 (74%), Gaps = 10/566 (2%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||||||| || |||| ||| ||||| || |||||||||| ||||| Sbjct 857498 CGAGCCGCTGCTCAAGGAGAACCACCGCCGGTTTGTGCTCTTCCCCATCCAGTACCACGA 857439 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || ||||||||||||||| | || | Sbjct 857438 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATC 857380 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 ||||| |||| || | |||||| | ||| | | |||||||||| |||||| Sbjct 857379 TCGGCAAGGACATGGGCGACTGGGAGAACCGGCTCAACAACGACGAGCGGTTCTTCATCT 857320 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||| || ||||| ||| || || |||||| || ||| ||||||||||| | Sbjct 857319 CGCACGTGCTGGCCTTCTTT-GCTGCTTCCGATGGTATTGTGAACGAGAACCTGGTGGAG 857261 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || ||||| || | || ||||| | || ||||| ||||||||| Sbjct 857260 CGATTCTCCGGCGAGGTGCAGGTCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATG 857201 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| ||||| |||||||| ||||||||||| ||| |||||||||| Sbjct 857200 ATGGAGAACATCCACTCGGAAACGTACTCGCTGCTGATCGACACATACATCAAGGACCCC 857141 Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 ||| | ||| |||| || ||||||||| || | || | | | ||| ||||| Sbjct 857140 AAGGAGC-GAACCTACCTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGC 857082 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 |||||||||| | ||||||||| | | || | ||||| ||||| ||||||||| | Sbjct 857081 CGACTGGGCGCTCAAGTGGATCTCCGACGA-CGAGTCGAC-CTTTGGCGAGCGGCTGATA 857024 Query 1456191 GGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | ||||||| ||||||||||||||| ||||| ||| ||| | ||||||| |||||| Sbjct 857023 GCTTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCCATCTTCTGGCTC 856964 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| || ||||||||||| || Sbjct 856963 AAGAAGCGAGGTCTCATGCCCGGCCT 856938 Score = 147 bits (162), Expect = 3e-29 Identities = 239/336 (71%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACC 1456507 ||| ||||| ||||||||||||||||||| | || |||| ||| || || | Sbjct 856903 GGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTCGCACCTCGAGAACCGACCCTCCAAG 856844 Query 1456508 GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAG 1456567 | | | || | | || ||||||||||| | |||||| | ||||| | | ||| Sbjct 856843 AAGATTGTCGAGGACGTGATTGTCGAGGCCGTTGGTATCGAGCAGGAGTTCCTGACCGAC 856784 Query 1456568 TCGCTGCCG-GTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAAT 1456626 | ||||| |||| || |||| |||||||||| ||||||||||||||||||||| | Sbjct 856783 GCCCTGCCCTGTGGT-CTGCTCGGAATGAACGCCAA-GCTCATGTGCCAGTACATTGAGT 856726 Query 1456627 TTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAA 1456686 || ||||||||||| ||||| | || |||||| | ||| |||| | |||| Sbjct 856725 TT-GTCGCCGACCGTCTGCTGGTTGCTCTCGGCAACTCC-AAGGTCTACAACTCCACCAA 856668 Query 1456687 CCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCG 1456746 ||| ||| | |||||| |||||||| | |||||||||||||| |||||| || Sbjct 856667 CCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAGACCAACTTCTTCGAGAAGCG 856608 Query 1456747 CGTG-GCGAGTACGCCAAGGCCGGCGTCACCGCCAA 1456781 ||| ||| ||| ||||||||||||| ||||| Sbjct 856607 GGTGTCCGACTACCAGAAGGCCGGCGTCATGGCCAA 856572 Score = 123 bits (136), Expect = 4e-22 Identities = 217/312 (70%), Gaps = 3/312 (1%) Strand=Plus/Plus Query 1817478 GAGGGCGTCCATGACCAGGCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAG 1817537 ||| | |||| || | ||| |||| ||||||||||| ||| || ||||| ||| || Sbjct 1819122 GAGCGTGTCCTGCACAATGCCCATGACGGGCTTGTTGGACTGAGGGGACACAATCTGCAG 1819181 Query 1817538 -GGCCACGTTCATGGTGTGCGTCACCTCGGCGCGCG-CGTCTCAGACTGGGGCACATGGA 1817595 ||| | | || | |||| || |||||| |||| | ||| ||||| || ||||| | Sbjct 1819182 AGGCACCATGCACAG-CTGCGACAGCTCGGCCCGCGTCTCCTCGGACTGAGGAACATGCA 1819240 Query 1817596 GGTTCATCTCGTCGCCGTCAAAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACC 1817655 ||||||| ||||| ||||| || ||||| ||||||| |||||| | |||||||| || Sbjct 1819241 GGTTCATTTCGTCTCCGTCGAAATCGGCGTTGTAGGGCGACGTGACCGACAGGTTGAGCC 1819300 Query 1817656 GCATGGTACGGCCGGGCATGGGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTG 1817715 | | ||| | |||||| | |||| ||| | |||||| | || || | Sbjct 1819301 GGAAGGTCGAGTACGGCATGACCCGCACCCGGTGGGCCATCATGGACATTTTATGCAGCG 1819360 Query 1817716 AGGGCTGCCGGTTCATCACCACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACC 1817775 | ||||| ||||| | || ||||| |||| | | |||||| ||||| || |||| | Sbjct 1819361 ACGGCTGTCGGTTGAACAGCACGGGGTCGTTGTCCATCAGGTGGCGCTCCACCTTCCAGC 1819420 Query 1817776 CAATTTGCAGCG 1817787 | ||||||| Sbjct 1819421 CGTACTGCAGCG 1819432 >seq4 Length=2565013 Score = 154 bits (170), Expect = 2e-31 Identities = 214/300 (71%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | |||||| || ||| |||||| || | || || || | || || Sbjct 2493942 ACCTACAACTACATGTCTCAAAAGTACTTCACCCACGCTTCCCCTACCCTGTACAACGCA 2494001 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || || | || |||| |||||||| || || | ||||||||| ||| || ||| Sbjct 2494002 GGAACCCCCCAGCCCCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATC 2494061 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || |||||||| ||||| |||||| || || |||||||||||| | || || || ||| Sbjct 2494062 GACGGCATCTACGACACCCTCAAGACTTGTGCTCTCATCTCCAAGTCCGCTGGAGGTATC 2494121 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 ||| | || ||||| | || ||| | || ||||| | || || |||||||| Sbjct 2494122 GGTCTGTCCATCCACAACATCCGAGCCACCGGATCCTACATTGCCGGAACCAACGGTACC 2494181 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||||||| | ||||||||||| || || | ||| |||| || || |||||||||||| Sbjct 2494182 TCCAACGGTATCGTGCCCATGCTGCGTGTCTACAACAACACCGCTCGATACGTCGACCAG 2494241 Score = 105 bits (116), Expect = 1e-16 Identities = 323/496 (65%), Gaps = 14/496 (3%) Strand=Plus/Plus Query 262922 TGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCA 262981 |||| |||||| |||| ||||| | |||||| || || | || || ||||| || ||| Sbjct 2495164 TGCGAAACTCGCTGCTGGTGGCCCCCATGCCTACCGCTTCCACTTCTCAGATTCTCGGCT 2495223 Query 262982 ACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCG 263041 || |||| |||||| | ||| |||||| ||| | || || ||||| | || | Sbjct 2495224 TCAACGAGTGCTTCGAGCCCTACACCTCCAACATTTACTCTCGACGAGTGCTTGCTGGTG 2495283 Query 263042 ACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGC 263101 | || | ||||||| | ||| ||||| | |||| | | || ||||||| | Sbjct 2495284 AGTTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTTGGTCTGTGGAA-C 2495342 Query 263102 CCGACTTTCGCGA-CCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAG 263160 ||| | || ||| || | || | | || || |||||| | | | || Sbjct 2495343 GAGACCATGAAGAACCGAATCGTGGCCGACAACGGATCCGTGCAGAACATCCCCAACA-- 2495400 Query 263161 GAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTG 263220 | || | || |||||| || | |||||||||||||||| | | | | Sbjct 2495401 ----TCCCCCAGGAGATCAAGGACCTGTACAAGACCGTGTGGGAGATTTCTCAGAAGCGA 2495456 Query 263221 ACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTG 263280 | ||| || ||||| |||||||| | |||| | |||||| |||||| |||||| | Sbjct 2495457 ATCATCGAGATGGCTGCCGACCGATCCCCCTTCATTGACCAGTCCCAGTCCCTCAACATC 2495516 Query 263281 TACCTCGCCGACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGT 263337 || || ||||| || || | || |||| || |||||| ||| | ||| Sbjct 2495517 CACATCAAGGACCCCACCATGGGCAAG---CTCACTTCCATGCACTTCTACGGCTGGAAG 2495573 Query 263338 CGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAA 263397 || |||||||| || |||||||| ||||| ||| | | |||||| | |||| || Sbjct 2495574 AAGGGTCTCAAGACCGGTATGTACTACCTGCGAACCATGGCTGCTGCCGCCCCCATCCAG 2495633 Query 263398 TTCACCGTCGATCAGG 263413 |||||| |||| |||| Sbjct 2495634 TTCACCATCGACCAGG 2495649 >seq1 Length=3339266 Score = 98.7 bits (108), Expect = 1e-14 Identities = 163/231 (71%), Gaps = 12/231 (5%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | |||||||||||||| |||||| |||||| || | | ||| Sbjct 441569 TACTCTTCTTACATCTACAAGGTGCTGAAGCAGACCCACCCCGACACTGGT-----ATC- 441622 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 |||| | ||||||| ||||||||||| || |||||||| || |||| || | | | Sbjct 441623 TCCACCCGAGCCATGTCCATCATGAACTCCTTCGTCAACGATATCTTCGAGCGAGTTGCC 441682 Query 725019 ACCGAGGCCGGTC---GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 ||||||||| || || || | | || || |||| ||| ||| | || ||| Sbjct 441683 ACCGAGGCC--TCCAAGCTTGCCAC-CTACACCAAGAAGTCCACCATCACTTCTCGAGAG 441739 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126 ||||||||||| || || || ||| | | ||| || ||||||| ||||||| Sbjct 441740 ATCCAGACCGCTGTCCGACTTATCCTCCCCGGAGAGCTGGCCAAGCACGCC 441790 >seq2 Length=3147093 Score = 89.7 bits (98), Expect = 7e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 262118 CATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAAC 262177 || ||||| ||||| || | |||| ||||||||||| | |||| | |||| Sbjct 1304537 CAGATCGAAACCGGAGGACCGTTCATGCTCTACAAGGACAGCTGCAACGCCAAATCCAAC 1304596 Query 262178 CAGCAGAACCTGGGCACCACGACAGAGGCCAACCTGTGCACCGAGATCGTCCAGTTTTCG 262237 ||||||||||||||||||| | | |||| |||||||| || |||||||||| ||| Sbjct 1304597 CAGCAGAACCTGGGCACCATCAAGTCGTCCAATCTGTGCACGGAAATCGTCCAGTACTCG 1304656 Query 262238 TCGCCCACCGAGGCAAGTGTGTGCAACCTCTCGAGCGTGGCCCTGCCCAAGTTTGTC 262294 |||||| |||| |||||||| | || || || ||||| |||||||| Sbjct 1304657 TCGCCCGAAGAGGTGGCAGTGTGCAATTTGGCGTCTGTAGCTTTGCCCGAGTTTGTC 1304713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807245474642