Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 138 1e-27 seq2 131 2e-25 seq8 125 7e-24 seq11 122 9e-23 >seq4 Length=2565013 Score = 138 bits (152), Expect = 1e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| |||||||| || ||||| || ||||| ||||| || ||||||||||| | Sbjct 110119 CCTCCTCGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 110178 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| |||||||| ||||| || ||||||| |||||||| || || || Sbjct 110179 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGA 110238 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | |||||||| || ||||| Sbjct 110239 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 110298 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCA 134712 ||||| || ||||| || || || | || || || || ||||||| Sbjct 110299 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 110344 Score = 114 bits (126), Expect = 1e-20 Identities = 389/600 (65%), Gaps = 7/600 (1%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| || || | ||||||||| || || ||| || || ||| | |||| || Sbjct 2493839 CTACCTGCTGCGAGTCAACGGCGCTGTTGCCGAGCGACCCCAGCAGATGATCATGCGAGT 2493898 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | | || || || |||||||| |||||| | ||| | || || ||| | ||||| Sbjct 2493899 GTCTGTCGGTATCCACGGCGACAACATTGCCCGAGCCATTGAGACCTACAACTACATGTC 2493958 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 | || | || || |||||||| || ||| ||| ||| || || | ||| || Sbjct 2493959 TCAAAAGTACTTCACCCACGCTTCCCCTACCCTGTACAACGCAGGAACCCCCCAGCCCCA 2494018 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 |||| |||||||| | | | |||| || ||| |||||||||||| ||| |||| Sbjct 2494019 GATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCATCTACGACAC 2494078 Query 7764 GCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACG 7822 || | || ||| || || ||||| | || || || || |||||| | | || Sbjct 2494079 CCT-CAAGACTTGTGCTCTCATCTCCAAGTCCGCTGGAGGTATCGGTCTGTCCATCCACA 2494137 Query 7823 ACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGC 7882 || | || |||| ||| | ||| | |||||||| | ||| |||| | | || Sbjct 2494138 ACATCCGAGCCACCGGATCCTACATTGCCGGAACCAACGGTACCTCCAACGGTATCGTGC 2494197 Query 7883 CCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCA 7939 ||||| |||| || | ||| ||| | | ||| | || |||||||| || ||||| Sbjct 2494198 CCATGCTGCGTGTCTACAACAACACCGCTCGATACGTCGACCAGGGAGGCAACAAGCGAC 2494257 Query 7940 AAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCT-AAAT 7998 || ||| |||||| || ||||||| ||||||| ||| | | || ||| || | Sbjct 2494258 CCGGAGCCTTTGCCATGTACCTGGAGCCCTGGCACGATGACGTCTTCG-AGTTCTGCGAG 2494316 Query 7999 CTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGG 8058 ||||| ||| ||| || || | ||| || ||||| ||| | | | ||| Sbjct 2494317 CTGCGAAAGAACCACGGTAAGGAGGAGATTCGAGCCCGAGATCTGTTCCTGGCTCTCTGG 2494376 Query 8059 GTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCC 8118 | ||||| ||||| ||| ||| || | |||| | ||| | |||||||||||| Sbjct 2494377 ATTCCCGACCTGTTCATGGAGCGAGTCGAGCAGAACGCCGAGTGGACTCTCATGTGCCCC 2494436 >seq2 Length=3147093 Score = 131 bits (144), Expect = 2e-25 Identities = 357/542 (66%), Gaps = 5/542 (1%) Strand=Plus/Plus Query 7868 CCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGG 7927 |||| ||| | | |||||| | | || ||||| ||| | | ||| |||| ||||||| Sbjct 1304154 CCAGTGGTATTGTTCCCATGCTCAGGGTTTTCAACAACACTGCGCGGTATGTCGACCAGG 1304213 Query 7928 G-GGGAA--AGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTT 7984 | ||||| |||| || || |||||||||| ||||||| ||||| ||||| || | Sbjct 1304214 GTGGGAACAAGCGTCCCGGAGCGTTTGCCATCTATCTGGAGCCCTGGCATGCGGATATAT 1304273 Query 7985 ACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTAT 8044 || | || || ||||| ||| || ||||| | || ||| | || || | Sbjct 1304274 TCGATTTCCTGAACCTGCGGAAAAACCACGGAGCGGAAGAGAACAGAGCAAGAGACCTGT 1304333 Query 8045 TCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGT 8104 ||| || |||||||||||| || ||||| |||| ||| || | | || | | |||| Sbjct 1304334 TCTACGCATTGTGGGTGCCGGACCTGTTCATGAAGCGGGTGGAAAGAGGCGAAAAGTGGT 1304393 Query 8105 CGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAAC 8164 | | | || || | | |||| | || |||| | || | | ||||| | Sbjct 1304394 CCTTGTTCTGTCCAAAGAGGGCCCCTGGGCTGGAAGACGTGTGGGGAGCGGACTTTGAGC 1304453 Query 8165 AATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAG-TGAAAGCGCGCGAC 8223 || |||| | | ||||| | | ||| || | || | || | || |||| || Sbjct 1304454 AAAAGTACGAGGAGTACGAGAAAAAGGGCTTGTTCAA-CGCCCAGATCAACGCGCAGGAG 1304512 Query 8224 CTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAA 8283 ||| | || || || |||| | ||||||||| |||| |||||| ||||| Sbjct 1304513 CTGTTCAAGGCGATCCTCACGAGTCAGATCGAAACCGGAGGACCGTTCATGCTCTACAAG 1304572 Query 8284 GACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTG 8343 ||| |||||||||||| ||| || ||| |||||||||| | ||||||| Sbjct 1304573 GACAGCTGCAACGCCAAATCCAACCAGCAGAACCTGGGCACCATCAAGTCGTCCAATCTG 1304632 Query 8344 TGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCG 8403 ||| | ||||| || |||||| ||||||| || ||||| || |||||| | ||||| Sbjct 1304633 TGCACGGAAATCGTCCAGTACTCGTCGCCCGAAGAGGTGGCAGTGTGCAATTTGGCGTCT 1304692 Query 8404 GT 8405 || Sbjct 1304693 GT 1304694 >seq8 Length=911341 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| |||||||| ||||| || || ||||| ||||| || ||||||||||| | Sbjct 549461 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 549520 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| || || || || || | |||||||| || || || Sbjct 549521 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 549580 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | |||||||| || ||||| Sbjct 549581 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 549640 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 || || || || || |||||||| | || || || ||||| ||||||| Sbjct 549641 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 549689 >seq11 Length=586936 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| |||||| | ||| ||||| || ||||||||||| || |||||||||||| Sbjct 306107 CCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAG 306048 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| || || || || || | |||||||| || || || Sbjct 306047 AGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 305988 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | ||||| || || || || Sbjct 305987 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCGACC 305928 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || |||||||| ||||| Sbjct 305927 TCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTGCAT 305881 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| |||||| | || || || || || || ||||| || |||||||||||| Sbjct 305879 CCACCTCGGAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 305820 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| |||||||| || || || || || | |||||||| || || || Sbjct 305819 AGAGTTCGTCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 305760 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | || ||||| || || || Sbjct 305759 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAGGACTCAACC 305700 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || || || || ||||| Sbjct 305699 TCGAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 305653 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| |||||| | || || || || ||||| ||||| || |||||||||||| Sbjct 305091 CCACCTCGGAGTCGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 305032 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| |||||||| || || || ||||| | |||||||| || || || Sbjct 305031 AGAGTTCGTCCGTCCTCGAGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGA 304972 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || ||||| || ||||| ||| | |||||||| || || || Sbjct 304971 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGAC 304913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398140983320