Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 179 5e-40 seq3 122 1e-22 >seq4 Length=2565013 Score = 179 bits (198), Expect = 5e-40 Identities = 470/712 (66%), Gaps = 4/712 (1%) Strand=Plus/Minus Query 69508 TATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACAC 69567 || ||| | | ||| || || || | || ||||| | ||||| || || || || ||| Sbjct 2494489 TACAGCTGCTTGAACTCGTCACCGTAGACGTCATCGAGGCCAGGGCACTCGTTGGGGCAC 2494430 Query 69568 ATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGA 69627 || | | |||| | | | | || ||||| | ||| || || ||||||||||| ||| Sbjct 2494429 ATGAGAGTCCACTCGGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGAATCCAGAGA 2494370 Query 69628 GCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGA 69687 || | || ||||||| || || | | || || || || || ||| || ||| Sbjct 2494369 GCCAGGAACAGATCTCGGGCTCGAATCTCCTCCTTACCGTGGTTCTTTCGCAGCTCGCAG 2494310 Query 69688 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTA 69747 ||||| | | ||| ||||| || || || || || || | | |||| ||||| || Sbjct 2494309 AACTCGAAGACGTCATCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGTCGCTTG 2494250 Query 69748 TTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATA 69807 || |||||||| || | ||||| || ||||| || ||||| | |||||| || | ||| Sbjct 2494249 TTGCCTCCCTGGTCGACGTATCGAGCGGTGTTGTTGTAGACACGCAGCATGGGCACGATA 2494190 Query 69808 CCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATA 69867 || || || |||| || ||||| | ||| || ||| | || || || || || Sbjct 2494189 CCGTTGGAGGTACCGTTGGTTCCGGCAATGTAGGATCCGGTGGCTCGGATGTTGTGGATG 2494130 Query 69868 GATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATAT 69927 || ||||| || ||||| || || ||||| ||||||||| || | ||||| || Sbjct 2494129 GACAGACCGATACCTCCAGCGGACTTGGAGATGAGAGCACAAGTCTTGAGGGTGTCGTAG 2494070 Query 69928 ATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGT 69987 || || || ||| || || ||||||| | ||| ||||| ||||| || | || Sbjct 2494069 ATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGGGGCTGG 2494010 Query 69988 ATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA-AAGCAG 70046 ||||| || || | | ||||| || ||||| ||||| | |||| ||| | | || Sbjct 2494009 GGGGTTCCTGCGTTGTACAGGGTAGGGGAAGCGTGGGTGAAGTACTTTTGAGACATGTAG 2493950 Query 70047 ATTGTATGTTTCAATAGCTGATTCTAT-ATCCCACTGATGAATTCCTATCGCGACACGCA 70105 ||||| || ||||| ||| | || | | | | || || || | | || |||| Sbjct 2493949 -TTGTAGGTCTCAATGGCTCGGGCAATGTTGTCGCCG-TGGATACCGACAGACACTCGCA 2493892 Query 70106 TCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTT 70165 | | ||| ||||| ||||| || | || | | || |||||| | | | Sbjct 2493891 TGATCATCTGCTGGGGTCGCTCGGCAACAGCGCCGTTGACTCGCAGCAGGTAGGCTCGCT 2493832 Query 70166 CCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||| || || || ||||| |||||||| | ||||||| ||||| | ||| Sbjct 2493831 CCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 2493780 >seq3 Length=2716294 Score = 122 bits (134), Expect = 1e-22 Identities = 381/587 (65%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| ||||| || || ||||| |||| || | ||||| || || ||||| Sbjct 856881 CAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 856940 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||| ||||| ||||| |||||||| || |||| || || || || || |||||| Sbjct 856941 CCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAG 857000 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GT 39793 ||||| || || || ||||| || | || | ||| || | | | || | | Sbjct 857001 ATGCCCTCGACGGCGGCAAAAGCTATCAGCCGCTCGCCAAAGGTCGACTCGTCGTCGGAG 857060 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 |||||||| | ||||| || || |||||||| | || || || || || || || || Sbjct 857061 ATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTG 857120 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 || || || | || | || || | ||||| || || | ||| ||| || Sbjct 857121 AACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACGTT 857180 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || |||||||| || ||| ||||| || ||||| || || | || || | | Sbjct 857181 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGACC 857240 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || ||||| | |||| ||| ||| || || ||||| || ||||| ||| ||| Sbjct 857241 TGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCATCGGAAGCAGCA 857300 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTG-TCAATTTATTCCAG 40090 || || |||| || || || || | || ||| | || | || | |||| Sbjct 857301 AAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTCGTTGTTGAGCCGGTTCTCCCAG 857360 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || || || || | ||| | || || || ||||| || || ||||| ||||| Sbjct 857361 TCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTC 857420 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 |||||||| | ||| || || | || || || || || | ||||| Sbjct 857421 TTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 857467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908447959240