Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 264 1e-65 seq3 127 3e-24 >seq4 Length=2565013 Score = 264 bits (292), Expect = 1e-65 Identities = 1147/1787 (64%), Gaps = 59/1787 (3%) Strand=Plus/Minus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 ||||||| || || ||| ||| | | ||| || |||||||| ||||||||||| | Sbjct 2495637 TGAACTGGATGGGGGCGGCAGCAGCCATGGTTCGCAGGTAGTACATACCGGTCTTGAGAC 2495578 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 110450 | | ||||| |||| | ||||| |||| ||||||| ||| || || | ||| Sbjct 2495577 CCTTCTTCCAGCCGTAGAAGTGCATGGAAGTGAGCTTGCCCATGGTGGGGTCCTTGATGT 2495518 Query 110451 AGAGGTTCA--TACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAAT 110508 || ||| | ||| ||| |||||||||||| | || | || ||||| || || Sbjct 2495517 GGATGTTGAGGGACTGGGAC--TGGTCAATGAAGGGGGATCGGTCGGCAGCCATCTCGAT 2495460 Query 110509 GACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGAT 110568 || |||| ||| ||||| || || || || | |||||| || | ||||| Sbjct 2495459 GATTCGCTTCTGAGAAATCTCCCACACGGTCTTGTACAGGTCCTTGATCTCCTGGGGGAT 2495400 Query 110569 ATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGA 110628 | | ||| ||||| | ||| || | ||| || | | |||||| || | Sbjct 2495399 GTTGGGGATGTTCTGCACGGATCCGTTGTCGGCCACGATTCGGTTCTTCATGGTCTCGTT 2495340 Query 110629 CCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACC 110688 ||| ||||||| || ||||| |||| || ||||||||| |||||||| Sbjct 2495339 CCACAGACCAACCTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACAATCTGGAACTCACC 2495280 Query 110689 TGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACC 110748 || || || || ||| ||||| | ||||| || || ||||| || || || Sbjct 2495279 AGCAAGCACTCGTCGAGAGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGAAGCC 2495220 Query 110749 CAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC 110808 | || || | ||||| || || ||||| || |||| || || ||| || | || Sbjct 2495219 GAGAATCTGAGAAGTGGAAGCGGTAGGCATGGGGGCCACCAGCAGCGAGTTTCGCATTCC 2495160 Query 110809 CTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT----TGGTTTCAC 110864 ||| | |||| |||||||| | ||||| || | ||||| || |||| Sbjct 2495159 GGTCTTCATGATCTTGGCCTTGAGATCGTCCCACTCCCA---GAGCTCGGAGGGAGTCAC 2495103 Query 110865 CTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCAT 110924 || ||||| ||||||||| || | || | ||| || ||||| |||| ||||| || | Sbjct 2495102 GTT-CCACAGGTCAAACTGCAGGTCACCCTTGGAGGCAGGAGAGCCCTGGAAGGTCTCGT 2495044 Query 110925 AGGAACCTTGGGCTTCA---GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGG 110981 | | ||| | | ||| |||| || | ||||| | || |||| || |||| Sbjct 2495043 AAGCACC---GTCCTCAAGGGCCATCTCGTAAGAAGCCTCAACGGCACCGTGGTAGATGG 2494987 Query 110982 TTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG-CGGCAC 111040 | || ||||| | || | || |||||| || || || || || | | || ||| Sbjct 2494986 TCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACTCGAA-GGGCAGTCGGAGG 2494928 Query 111041 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100 || || ||| || ||||| || ||||||| | |||| |||| ||||||||| || Sbjct 2494927 GCCATGAAGGTATCAGCCAGACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTTG 2494868 Query 111101 GACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTT 111157 ||||| | | |||| || || || | |||| |||||||| ||| || ||| Sbjct 2494867 GACTT---CTTGGCCTCAGGGACAGGGTAGTAGTTTCGGTCAATGATGGCGTTGAGGTTT 2494811 Query 111158 TTGGTAACAATCTTTGTGATTTCATGAAG-TTTTTCA--TAATCAAAAGTGCGAGTCTCT 111214 || | ||| | || || || || || || | | | || | | ||||| Sbjct 2494810 CGCACAATCACCTTGGCAATATCGTGCAGCTTCTTGAAGTCGTAGAAGGAGTTGGTCTCG 2494751 Query 111215 TC---ATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCC 111271 || | ||||| | | || || ||||| || |||| ||||| ||||| |||||| Sbjct 2494750 TCTCGAGTGACAAAGGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATCA 2494691 Query 111272 TTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTC 111331 | | |||||| | ||| || ||| | ||||||| ||| || || |||| ||| Sbjct 2494690 GGAGAAGAGTACTCGACAATCTCGCAACACAGGTTGGAAGACTTGATGGTACCCAGGTTC 2494631 Query 111332 TTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 111391 || ||||| ||| |||||| || ||||||||||||||| |||| | || | ||| Sbjct 2494630 TTCTGGTTGGACTTTCGGTTGCAGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGACTCG 2494571 Query 111392 GTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGG--CGTTGGCC 111448 ||||| | | ||||| | ||| | | || | ||| || |||| ||| | || Sbjct 2494570 GTCTGGCAGTCCAGAATGTGGTACCACAGCTTCTG-GGCAGG---GATGGTTCGTCGACC 2494515 Query 111449 -CGTCCCTCCGCCTCGTACTTTGTGTAGAG-GGCTTCAAACTCCTCACCCACCGCGTCGG 111506 || |||||| |||||||| ||| || |||| ||||| ||||| |||| Sbjct 2494514 TCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCTT-GAACTCGTCACCGTAGACGTCAT 2494456 Query 111507 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCAACCCG 111564 ||| || || || || || || | |||| ||| | | | ||| ||| || || Sbjct 2494455 CGAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCACT--CGGCGTTCTGCTCGACTCG 2494398 Query 111565 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 111624 || |||||| ||||| |||||||| || | || ||||||| ||| ||| || Sbjct 2494397 CTCCATGAACAGGTCGGGAATCCAGAGAGCCAGGAACAGATCTCGGGCTCGAATCTCCTC 2494338 Query 111625 GTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 111684 | ||| ||||| ||| | ||| |||||| | || || ||||||| ||||| || Sbjct 2494337 CTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGACGTCATCGTGCCAGGGCTCCAG 2494278 Query 111685 ATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTG 111737 || | || | | ||| ||| | | | ||| || | || || || || | Sbjct 2494277 GTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCCC----TGGTCGACGTATCGAGCGG 2494222 Query 111738 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA 111797 || ||| | || || ||||| || | ||||| | || ||| || || || || Sbjct 2494221 TGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTGGTTCCGGCAA 2494162 Query 111798 TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG 111857 | ||| |||||| | | |||||| || || ||||| ||||| |||| | Sbjct 2494161 TGTAGGATCCGGTGGCTCGGATGTTGTGGATGGACAGACCGATACCTCCAGCGGACTTGG 2494102 Query 111858 AGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG 111917 |||| | ||||| | | || || | ||||| |||| ||| ||||| ||||| || Sbjct 2494101 AGATGAGAGCACAAGTCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGT 2494042 Query 111918 CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG 111977 || |||||| || |||||||| || || || || || ||| | ||||| || | Sbjct 2494041 TGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCTGCGTTGTACAGGGTAGGGG 2493982 Query 111978 TTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATG 112036 ||||| |||| ||| ||| ||||| | || ||| ||||| | | | ||||| Sbjct 2493981 AAGCGTGGGTGAA-GTACTTTTGAGACATGTAGTTGTAGGTCTCAATGGCTCGGGCAATG 2493923 Query 112037 TCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | || |||||||| |||| | || ||||||| ||| | ||| || Sbjct 2493922 TTGTCGCCGTGGATACCGACAGACACTCGCATGATCATCTGCTGGGG 2493876 >seq3 Length=2716294 Score = 127 bits (140), Expect = 3e-24 Identities = 299/446 (67%), Gaps = 14/446 (3%) Strand=Plus/Plus Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439 ||||||||||| |||||||||||||| || | || ||||| ||||| ||||| || Sbjct 856605 ACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTCTCCATGAAGTCGAAG 856664 Query 122440 GGATTCTTCGCGTTCCAAA---TGG-GTGGC--ACCCCAACTTGTTTGAGGAGACGATCC 122493 || || | | ||| | | ||| || || | |||| || ||||| || Sbjct 856665 GGGTTGGTGGAGTTGTAGACCTTGGAGTTGCCGAGAGCAACC------AGCAGACGGTCG 856718 Query 122494 GACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG 122553 | ||| |||||||||||| | |||| || | |||||| |||| || ||| || Sbjct 856719 GCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGCAGACCACAGGGC 856778 Query 122554 AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATA 122613 || ||||| | |||| | | ||| || |||| ||||| | | | | | || | Sbjct 856779 AGGGCGTCGGTCAGGAACTCCTGCTCGATACCAACGGCCTCGACAATCACGTCCTCGACA 856838 Query 122614 GTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAACTCCTGGTG 122672 | | | | ||||| || | | | || | ||||||| |||||| || ||| Sbjct 856839 ATCTTCTTGGAGGGTCGGTT-CTCGAGGTGCGAGAAGAGCAGACAGGCAAAGTCGGTGTG 856897 Query 122673 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCG 122732 |||||||| |||||||| || || || || |||||| || || ||||||||||| || Sbjct 856898 CAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCG 856957 Query 122733 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 122792 |||||| | ||| | || | | ||| || |||||||||||||| ||||| || || Sbjct 856958 CTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCGGC 857017 Query 122793 AAACGCAAAAAGGCGTTCGGCGAAGG 122818 ||| || | || || ||| | |||| Sbjct 857018 AAAAGCTATCAGCCGCTCGCCAAAGG 857043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031678133600