Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 150 2e-31 seq2 105 8e-18 >seq3 Length=2716294 Score = 150 bits (166), Expect = 2e-31 Identities = 350/520 (67%), Gaps = 16/520 (3%) Strand=Plus/Plus Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 129796 |||||||||||||||||||| ||||| ||| ||| ||| |||||||| || || || Sbjct 856605 ACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTCTCCATGAAGTCGAAG 856664 Query 129797 GGGTTCTTTGAGTTCCAAA--TTGCTG--GC--ACTCCAATCTGTTTGAGGAGACGATCC 129850 ||||| | ||||| | | ||| | || | ||| | || ||||| || Sbjct 856665 GGGTTGGTGGAGTTGTAGACCTTGGAGTTGCCGAGAGCAACC------AGCAGACGGTCG 856718 Query 129851 GAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGG 129910 | ||| |||||||||||| |||| || || |||||| |||| || ||| || Sbjct 856719 GCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGCAGACCACAGGGC 856778 Query 129911 AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATG 129970 || ||||| | |||| ||| ||| || | || || || | | | | | | Sbjct 856779 AGGGCGTCGGTCAGGAACTCCTGCTCGATACCAACGGCCTCGACAATCACGTCCTCGACA 856838 Query 129971 GTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCCTGGTG 130029 ||| | || |||| || | | | || | |||||| |||||| || ||| Sbjct 856839 ATCTTCTTGGAGGGTCGGTT-CTCGAGGTGCGAGAAGAGCAGACAGGCAAAGTCGGTGTG 856897 Query 130030 GAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCG 130089 ||||||||||| ||||||||||| || || |||||| || || ||||||||||| || Sbjct 856898 CAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCG 856957 Query 130090 CTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGC 130149 |||||| | |||||| || | || ||||| ||||||||||| ||||| || || Sbjct 856958 CTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCGGC 857017 Query 130150 GAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA-AACCACTTCATCGCCC 130208 || || | || ||||| |||||| || | | || | | |||||| | ||||| Sbjct 857018 AAAAGCTATCAGCCGCTCGCCAAAGG-TCGACTCGTCGTCGGAGATCCACTTGAGCGCCC 857076 Query 130209 ACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | | ||||| |||| ||| || |||| ||||| ||| || Sbjct 857077 AGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 857116 >seq2 Length=3147093 Score = 105 bits (116), Expect = 8e-18 Identities = 451/708 (64%), Gaps = 11/708 (2%) Strand=Plus/Minus Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 ||||||||||||| || || ||| |||||||||| ||||| || || || || | | Sbjct 1304643 ATTTCCGTGCACAGATTGGACGACTTGATGGTGCCCAGGTTCTGCTGGTTGGATTTGGCG 1304584 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || |||||||| |||||| | || || || || | || | |||| || Sbjct 1304583 TTGCAGCTGTCCTTGTAGAGCATGAACGGTCCTCCGGTTTCGATCTGACTCGTGAGGATC 1304524 Query 118884 GCCTTCCAGACATCGGCAGC-TGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTT 118942 ||||| | | || || | | | | ||||||| |||| || |||||||| Sbjct 1304523 GCCTTGAACAGCTCCTGCGCGTTGATCTG-GGCGTTGAACAAGCCCTTTTTCTCGTACTC 1304465 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002 ||| ||||| || | ||| | ||| ||||| || ||| | | ||| Sbjct 1304464 CTCGTACTTTTGCTCAAAGTCCGCTCCCCACACGTCTTCCAGCCCAGGGGCCCTCTTTGG 1304405 Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 ||||| | ||||| | | || || |||||||||||||| ||||| || | ||| Sbjct 1304404 ACAGAACAAGGACCACTTTTCGCCTCTTTCCACCCGCTTCATGAACAGGTCCGGCACCCA 1304345 Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 119122 | || |||| || || | | ||||| | || || || |||| | Sbjct 1304344 CAATGCGTAGAACAGGTCTCTTGCTCTGTTCTCTTCCGCTCCGTGGTTTTTCCGCAGGTT 1304285 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 119182 || || || | |||||||| ||||| || ||||| || | || | | || ||| Sbjct 1304284 CAGGAAATCGAATATATCCGCATGCCAGGGCTCCAGATAGATGGCAAACGCTCCGGGACG 1304225 Query 119183 ACGA---CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239 ||| |||||| ||||||| ||||||| ||| || || | ||||| |||| Sbjct 1304224 CTTGTTCCCACCCTGGTCGACATACCGCGCAGTGTTGTTGAAAACCCTGAGCATGGGAAC 1304165 Query 119240 GATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTG 119299 |||||| ||| || | | ||| ||| || |||||||||| || || Sbjct 1304164 AATACCACTGGACCTTCCCTGAGACCCAGTAATGATAGCACCCTTGGCTCTGATATTATG 1304105 Query 119300 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCC 119359 || |||| ||| ||||| || ||| || ||||||||||| ||| | |||| | | Sbjct 1304104 AATATGCAGACCGATACCTCCAGCCGTTTTCGAGATTTGCGCACACGTCTTGAGGGTATC 1304045 Query 119360 GTAGATCCCATCGATCGAGTC---ACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG 119416 |||||| || ||||| ||||| || || || | || || ||| ||||| ||| Sbjct 1304044 GTAGATTCCGTCGATGGAGTCGGATGCCATA---GCCACCAGAAAACAGGACGACAGTTG 1303988 Query 119417 AGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 | ||| ||||| || ||||| || || || | ||||| |||| Sbjct 1303987 TCCCTGGGGAGTACCGGCATTGAAAAGCGTGGGAGAAGCGTGTGTGAA 1303940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434883051960