Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 307 1e-78 seq2 156 5e-33 >seq4 Length=2565013 Score = 307 bits (340), Expect = 1e-78 Identities = 432/603 (72%), Gaps = 4/603 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || | | ||||||||||| ||| || | || | | |||||| ||| Sbjct 2493889 TCATGCGAGTGTCTGTCGGTATCCACGGCGACAACATTGCCCGAGCCATTGAGACCTACA 2493948 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| ||||||||||| || ||||| | || ||||||| |||||| || || Sbjct 2493949 ACTACATGTCTCAAAAGTACTTCACCCACGCTTCCCCTACCCTGTACAACGCAGGAACCC 2494008 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || || ||||||||| || ||||| || |||||||| ||||| |||||||||| Sbjct 2494009 CCCAGCCCCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCA 2494068 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-- 53430 ||||||| || |||||| ||||| | ||||||||||| | || ||||||||| | Sbjct 2494069 TCTACGACACCCTCAAGACTTGTGCTCTCATCTCCAAGTCCGCTGGAGGTATCGGTCTGT 2494128 Query 53431 CCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 ||| | | | ||| |||| || | ||| | || || || ||||| | || | Sbjct 2494129 CCA-TCCAC-AACATCCGAGCCACCGGATCCTACATTGCCGGAACCAACGGTACCTCCAA 2494186 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || |||||||| ||||| || |||| ||||||||| || || |||||| ||||||| || Sbjct 2494187 CGGTATCGTGCCCATGCTGCGTGTCTACAACAACACCGCTCGATACGTCGACCAGGGAGG 2494246 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | || ||||| ||||| ||||| ||||||| ||| | | || Sbjct 2494247 CAACAAGCGACCCGGAGCCTTTGCCATGTACCTGGAGCCCTGGCACGATGACGTCTTCGA 2494306 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| ||||||||| ||| || ||| | || ||||| || ||| || ||||| Sbjct 2494307 GTTCTGCGAGCTGCGAAAGAACCACGGTAAGGAGGAGATTCGAGCCCGAGATCTGTTCCT 2494366 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 ||||| |||||||| ||||| |||||| | || ||| || ||| |||||| || Sbjct 2494367 GGCTCTCTGGATTCCCGACCTGTTCATGGAGCGAGTCGAGCAGAACGCCGAGTGGACTCT 2494426 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| ||||||||||| |||||| | | ||||||||||| ||||| || || | Sbjct 2494427 CATGTGCCCCAACGAGTGCCCTGGCCTCGATGACGTCTACGGTGACGAGTTCAAGCAGCT 2494486 Query 53791 GTA 53793 ||| Sbjct 2494487 GTA 2494489 Score = 158 bits (174), Expect = 1e-33 Identities = 304/445 (68%), Gaps = 5/445 (1%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||| ||||| ||||| || ||||| ||||| || || ||||||| | ||| | Sbjct 2495166 CGAAACTCGCTGCTGGTGGCCCCCATGCCTACCGCTTCCACTTCTCAGATTCTCGGCTTC 2495225 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| ||||||| ||| || || || || |||||| Sbjct 2495226 AACGAGTGCTTCGAGCCCTACACCTCCAACATTTACTCTCGACGAGTGCTTGCTGGTGAG 2495285 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || ||||| || ||||||||||| || | ||||||| | Sbjct 2495286 TTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTTGGTCTGTGGAACGAG 2495345 Query 55664 CAGATCAAGA-CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCC 55719 || |||| | || || ||| || || ||||| ||||| | | || || Sbjct 2495346 ACCATGAAGAACCGA-ATCGTGGCCGACAACGGATCCGTGCAGAACATCCCCAACATCCC 2495404 Query 55720 TCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGA 55779 | | ||||||| | ||| ||| |||||||||||| | |||||| | | || || Sbjct 2495405 CCAGGAGATCAAGGACCTGTACAAGACCGTGTGGGAGATTTCTCAGAAGCGAATCATCGA 2495464 Query 55780 CATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGA 55839 ||| ||| || || | | ||| |||||||||||||| || |||||| ||| | Sbjct 2495465 GATGGCTGCCGACCGATCCCCCTTCATTGACCAGTCCCAGTCCCTCAACATCCACATCAA 2495524 Query 55840 GAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAA 55899 | | || | ||| |||| | | || |||||||| ||||| ||||||||||| ||||| Sbjct 2495525 GGACCCCACCATGGGCAAGCTCACTTCCATGCACTTCTACGGCTGGAAGAAGGGTCTCAA 2495584 Query 55900 GACGGGTATGTACTATCTGCGGACC 55924 ||| ||||||||||| ||||| ||| Sbjct 2495585 GACCGGTATGTACTACCTGCGAACC 2495609 >seq2 Length=3147093 Score = 156 bits (172), Expect = 5e-33 Identities = 454/689 (66%), Gaps = 10/689 (1%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || ||||| | || || || ||||| || ||||| || || ||||| | Sbjct 1303940 TTCACACACGCTTCTCCCACGCTTTTCAATGCCGGTACTCCCCAGGGACAACTGTCGTCC 1303999 Query 53333 TGCTTCCTGGTGGCGATGAAGGAT--GACTCGATCGACGGCATCTACGAGACGCTCAAGG 53390 || || |||||||| ||| | || ||||| |||||||| |||||||| || |||||| Sbjct 1304000 TGTTTTCTGGTGGCTATG--GCATCCGACTCCATCGACGGAATCTACGATACCCTCAAGA 1304057 Query 53391 AGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCG-AACGTCCGT 53449 |||||| || ||||| || | | || ||||||||| | || | || || || | Sbjct 1304058 CGTGTGCGCAAATCTCGAAAACGGCTGGAGGTATCGGTCTGCA-TATTCATAATATCAGA 1304116 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || || || | || | ||| | | || || ||| || || || |||||| Sbjct 1304117 GCCAAGGGTGCTATCATTACTGGGTCTCAGGGAAGGTCCAGTGGTATTGTTCCCATGCTC 1304176 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 | || ||||||||||| || ||||| ||| |||||||||| ||||| || || Sbjct 1304177 AGGGTTTTCAACAACACTGCGCGGTATGTCGACCAGGGTGGGAACAAGCGTCCCGGAGCG 1304236 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || |||||||| || ||||| ||||| || || || | || || || | ||||| Sbjct 1304237 TTTGCCATCTATCTGGAGCCCTGGCATGCGGATATATTCGATTTCCTGAACCTGCGGAAA 1304296 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGA 53688 || || || | ||||||| | | |||||||| ||| || ||||| | ||||| Sbjct 1304297 AACCACGGAGCGGAAGAGAACAGAGCAAGAGACCTGTTCTAC-GCATTGTGGGTGCCGGA 1304355 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 ||| |||||| | |||||| | | ||| |||||| | || | || || || ||| | Sbjct 1304356 CCTGTTCATGAAGCGGGTGGAAAGAGGCGAAAAGTGGTCCTTGTTCTGTCC-AAAGAGGG 1304414 Query 53749 CCCC-GGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAG 53807 |||| || || | | || | || | ||| ||| | | | ||| | ||||| Sbjct 1304415 CCCCTGGGCTGGAAGACGTGTGGGGAGCGGACTTTGAGCAAAAGTACGAGGAGTACGAGA 1304474 Query 53808 TTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGA 53867 ||||| | ||| || |||| |||| ||| | | | || ||||||| || Sbjct 1304475 AAAAGGGCTTGTTCAACGCCCAGATCAACGCGCAGGAGCTGTTCAAGGCGATCCTCACGA 1304534 Query 53868 GCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCA 53927 | ||| | || || ||| |||| |||| ||||||||| ||||| || || Sbjct 1304535 GTCAGATCGAAACCGGAGGACCGTTCATGCTCTACAAGGACAGCTGCAACGCCAAATCCA 1304594 Query 53928 ACCAGAAGAACATCGGCGTCATCAAATCG 53956 ||||| ||||| | ||| |||||| ||| Sbjct 1304595 ACCAGCAGAACCTGGGCACCATCAAGTCG 1304623 Score = 120 bits (132), Expect = 3e-22 Identities = 304/450 (68%), Gaps = 17/450 (4%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| ||||| || ||||| || || || ||| ||||||| | ||| || Sbjct 1305149 CGCAACTCGCTGCTGGTGGCTCCTATGCCTACGGCTTCCACGTCTCAGATTCTCGGCCAC 1305208 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| ||||||||||||| || || | |||||| ||| Sbjct 1305209 AACGAGTGTTTCGAGCCATACACCTCCAACATCTACCTTCGTCGAGTTCAAGCAGGCGAG 1305268 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || | ||||| | || | ||||| || ||| | || ||||||| | Sbjct 1305269 TTCCTCGTCGTCAACCACTGGCTGATGAAGGATCTCATCAAGCTGGGCATGTGGAACGAG 1305328 Query 55664 CAGATCAAGA--CGGATATTGTGCG-GAACGG-GGGGTCC-GTCCAGAATCTGGAGATTC 55718 ||||| |||| || || | || ||||| | ||| ||||| | | |||| | Sbjct 1305329 CAGATGAAGAACCGAATCATCCACGACAACGGCTCGATCCAGTCCATCACC--CAGATCC 1305386 Query 55719 CTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCA---CAGAAGAGTCTGA 55775 | || || | ||||| || | ||||| | || | |||| ||| | | Sbjct 1305387 CCGAAAACATCCGGGCCGTGTACCGAACCGCCTGGGA-AATCAAGGCCAGA--AGTATCA 1305443 Query 55776 TTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCA 55835 | |||||| |||| ||| | | ||||| |||||||| ||||| || ||||| |||| Sbjct 1305444 TCGACATGGCCGCTGCTCGAGCGCCCTACATTGACCAGTCGCAGTCGCTCAACATTTTCA 1305503 Query 55836 TG-GAG-AATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 || | | |||| ||| | ||| | | | ||||| || |||| ||||| | ||| Sbjct 1305504 TGCGCGAAATCACCCAC--GGCAAAATCACAGCCATGCATTTCCACGGCTGGAAAATGGG 1305561 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||||| || || |||||||| ||||| || Sbjct 1305562 CCTCAAAACAGGCATGTACTACCTGCGTAC 1305591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215719551800