Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq6 179 3e-40 seq2 86.0 5e-12 >seq6 Length=1972418 Score = 179 bits (198), Expect = 3e-40 Identities = 340/497 (68%), Gaps = 25/497 (5%) Strand=Plus/Minus Query 29872 CTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTC 29931 |||||| | ||||||| |||| ||| ||||||||||| |||| | | || | | ||| Sbjct 1597478 CTTCAGAGCGTCCACGTGATCCTTGTACACGTGAGCGTCGCCCATGGTATGAATGAGCTC 1597419 Query 29932 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29991 ||| || || |||| || || || ||||| || | |||| ||| ||| || Sbjct 1597418 TCCACAGTCCAGATCGGTCACCTGGGCAATCATTCGAGTCAACAGAGCATAGGAGGCAAT 1597359 Query 29992 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 30051 ||| ||||| || || || |||| || | |||| |||||| ||||||||||| ||| Sbjct 1597358 GTTGAAGGGAACACCCAGACCCAGATCACATGACCGCTGGTACAGCTGACACGACAGCCG 1597299 Query 30052 TCCGTCGCTCA----------------CGTAAAACTGACACATGGCGTGGCACGGAGGAA 30095 ||| ||||||| |||| ||||| || | |||||| ||||||| Sbjct 1597298 TCC-TCGCTCAGAGTTCTTGTACGACACGTAGAACTGGCAGAACATGTGGCAGGGAGGAA 1597240 Query 30096 GAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTG 30155 ||||||| | || ||| |||||||||||| ||| ||||| || | ||| | | Sbjct 1597239 GAGCCATTTTGGACAGGTCAGCGGGGTTCCAGGCTGACAGAATGATTCGACGGTCCTGAG 1597180 Query 30156 GGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 30212 ||||| | ||| || || ||| | |||| ||||||||||| ||| || | || Sbjct 1597179 GGTTGGTTTTGAGAGTGTGGATCAC--CTGTTTG-AGCTGATCCACACCCTGGCCAGTGT 1597123 Query 30213 AGTCTGCCCTCATG-TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACC 30271 | |||| ||| ||| |||| || ||||| ||||| | ||| ||||| || || || Sbjct 1597122 AATCTGTG-TCACAATCCTTGTATTCGGCTCCAAAATGACGCCATTGGAAGCCATATACA 1597064 Query 30272 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30331 ||||||||||||||||| || || | || || ||| |||| ||| || |||| Sbjct 1597063 GGTCCCAGGTCTCCCTCACGTCTATGTCCCAATCCAGCCTTTTCCAGAAACTCCTTGGAT 1597004 Query 30332 CCGTTGGCGTCCCAGAT 30348 || || ||||||| || Sbjct 1597003 CCATTTCCGTCCCAAAT 1596987 >seq2 Length=3147093 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 52729 TCGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52788 ||||||||||| | || | || ||| | ||| |||| || ||||||||||| ||| Sbjct 2760002 TCGTCAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCCTCGC 2759943 Query 52789 -TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCG 52845 |||||| || ||||| || || | | | | | ||| | ||||| ||||| ||| Sbjct 2759942 GTCACGGA-CAGAAGGGTACCATTGGTGTGACTTACAGACAC--GAGGATATGCCATTCT 2759886 Query 52846 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 52905 || || | |||||||| |||||||||||||||||||| ||||||| | |||| Sbjct 2759885 CAGCCGAGGGTATCGTGCCCGATATCATCATCAACCCCCACGCCATTCCCTCGCGTATGA 2759826 Query 52906 CCGT 52909 |||| Sbjct 2759825 CCGT 2759822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310196971772