Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq6 185 6e-42 seq2 89.7 4e-13 >seq6 Length=1972418 Score = 185 bits (204), Expect = 6e-42 Identities = 406/605 (67%), Gaps = 25/605 (4%) Strand=Plus/Minus Query 27138 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 27197 |||||| | |||||||||||| ||| ||||||||||| |||| ||| || | | ||| Sbjct 1597478 CTTCAGAGCGTCCACGTGATCCTTGTACACGTGAGCGTCGCCCATGGTATGAATGAGCTC 1597419 Query 27198 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 27257 ||| || || |||| || || || ||||| || | |||| ||| ||| || Sbjct 1597418 TCCACAGTCCAGATCGGTCACCTGGGCAATCATTCGAGTCAACAGAGCATAGGAGGCAAT 1597359 Query 27258 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 27317 ||| ||||| || || || |||| || | |||| |||||| ||||||||||| ||| Sbjct 1597358 GTTGAAGGGAACACCCAGACCCAGATCACATGACCGCTGGTACAGCTGACACGACAGCCG 1597299 Query 27318 TCCATCGCTTA----------------CGTAAAACTGACATATGGCGTGGCACGGAGGAA 27361 ||| ||||| | |||| ||||| || | |||||| ||||||| Sbjct 1597298 TCC-TCGCTCAGAGTTCTTGTACGACACGTAGAACTGGCAGAACATGTGGCAGGGAGGAA 1597240 Query 27362 GAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTG 27421 ||||||| | || ||| |||||||||||| ||| ||||| || | ||| | | Sbjct 1597239 GAGCCATTTTGGACAGGTCAGCGGGGTTCCAGGCTGACAGAATGATTCGACGGTCCTGAG 1597180 Query 27422 GGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 27478 ||||| | ||| || || ||| | |||| ||||||||||| ||| || | || Sbjct 1597179 GGTTGGTTTTGAGAGTGTGGATCAC--CTGTTTG-AGCTGATCCACACCCTGGCCAGTGT 1597123 Query 27479 AGTCTACCCTCATG-TCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACC 27537 | ||| ||| ||| |||| || ||||| ||||| | ||||||||| || || || Sbjct 1597122 AATCTGTG-TCACAATCCTTGTATTCGGCTCCAAAATGACGCCATTGGAAGCCATATACA 1597064 Query 27538 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 27597 ||||||||||||||||| || || | || || ||| |||| ||| || |||| Sbjct 1597063 GGTCCCAGGTCTCCCTCACGTCTATGTCCCAATCCAGCCTTTTCCAGAAACTCCTTGGAT 1597004 Query 27598 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 27657 || || ||||||| || | | || ||| |||| ||| || || | || Sbjct 1597003 CCATTTCCGTCCCAAATATGAATGTTTTTTTCGCTCAGCTTCTTGCCGTCGGTACATCCG 1596944 Query 27658 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 27717 || ||||| || |||||||||| ||| | |||| |||| ||| || || | Sbjct 1596943 GCCACAAACCAGAGAAGCTCCTCCAAAACGCCTCGGTAAAAAACCCGCTTTGTGGTCAAC 1596884 Query 27718 AGGGG 27722 ||||| Sbjct 1596883 AGGGG 1596879 >seq2 Length=3147093 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 48509 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-C 48567 ||||||||||| | || | ||| ||| | ||| |||| || ||||||||||| || | Sbjct 2760002 TCGTCAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCCTCGC 2759943 Query 48568 TTCACGGCGCAAAAGGGGACATGTGGAGC--CGTCCTGACCCAGGAGGACATGCCCTTCG 48625 |||||| || ||||| || ||| | | | | ||| | ||||| ||||| ||| Sbjct 2759942 GTCACGGA-CAGAAGGGTACCATTGGTGTGACTTACAGACAC--GAGGATATGCCATTCT 2759886 Query 48626 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 48685 || || | |||||||| |||||||||||||||||||| ||||||| | |||| Sbjct 2759885 CAGCCGAGGGTATCGTGCCCGATATCATCATCAACCCCCACGCCATTCCCTCGCGTATGA 2759826 Query 48686 CCGT 48689 |||| Sbjct 2759825 CCGT 2759822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507015361871