Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq11 125 2e-23 seq8 123 6e-23 seq4 109 1e-18 >seq11 Length=586936 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| ||||| ||||||||||| || ||||||||||| |||| | ||||| Sbjct 305871 GAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCG 305812 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || || ||||||||||| | ||||||||||| | || || || Sbjct 305811 TCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATACCCTC 305752 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || ||||| | || | | | || || ||| || || || || Sbjct 305751 CTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAGGACTCAACCTCGAGGGT 305692 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || ||||| || |||| |||||| Sbjct 305691 GATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 305653 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| ||||| || ||||| || || || ||||||||||| |||| | |||| Sbjct 306099 GAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCG 306040 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||||||||| | ||||||||||| | ||| || || Sbjct 306039 TCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTC 305980 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | |||| ||| ||| || || || || Sbjct 305979 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCGACCTCGAGGGT 305920 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || ||||||||||| | |||||| Sbjct 305919 GATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTGCAT 305881 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || |||||||| || ||||| || ||||||||||| |||| | ||||| Sbjct 305083 GAGTCGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCG 305024 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||| || || | ||||||||||| | ||||| || Sbjct 305023 TCCGTCCTCGAGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCCTC 304964 Query 152006 CTTTTCTTGAATTTT 152020 ||| || ||||| || Sbjct 304963 CTTGTCCTGAATCTT 304949 >seq8 Length=911341 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || || ||||| ||||| ||||| || ||||||||||| || | | |||| Sbjct 549469 GAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCG 549528 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||||||||| | ||||||||||| | ||||| || Sbjct 549529 GCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTC 549588 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || ||||| || Sbjct 549589 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 549648 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106 ||||| || || || || ||||| || || | |||||||| Sbjct 549649 GATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 549689 >seq4 Length=2565013 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||||| || ||||| ||||| || ||||||||||| || | | ||||| Sbjct 110127 GAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCG 110186 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||| || || | ||||||||||| | || || || Sbjct 110187 GCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATGCCCTC 110246 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || || || || Sbjct 110247 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGT 110306 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 || || ||||| || || ||||| || |||| |||| Sbjct 110307 GATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 110344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820193883511