Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20keelungensis_20[genbank_20GCA_5F001600195.1_202016-03-01] 41 sequences; 21,824,367 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq8 163 6e-35 seq11 158 3e-33 seq4 140 7e-28 seq1 116 8e-21 seq3 102 2e-16 >seq8 Length=911341 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || ||||| | ||| || || |||||||||||||||| Sbjct 549460 ACCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 549519 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || ||||| ||||| | || || ||||| || Sbjct 549520 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 549579 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 549580 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 549639 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 || || ||||| |||||||| || | ||||| || || |||||||||| Sbjct 549640 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 549689 >seq11 Length=586936 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || || || || | ||| ||| || |||||||||||||| | Sbjct 306107 CCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAG 306048 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || || ||||| ||||| | || || ||||| || Sbjct 306047 AGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 305988 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | || ||| | ||||||||||| |||| ||||| Sbjct 305987 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCGACC 305928 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 305927 TCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTGCAT 305881 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || |||||||| | || || || |||||||||||||| | Sbjct 305880 ACCACCTCGGAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 305821 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || || || ||||| | || || ||||| || Sbjct 305820 CAGAGTTCGTCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGG 305761 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | || || || || || | || || Sbjct 305760 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAGGACTCAAC 305701 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| ||||| || || |||||||| Sbjct 305700 CTCGAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 305653 Score = 125 bits (138), Expect = 1e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 282936 GTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATA 282995 || ||||||||||| || || || || || || || | || || ||||| |||||| Sbjct 305256 GTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATA 305197 Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| | || ||| | ||||||||||| || | || || ||| Sbjct 305196 CCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCAACCTCG 305137 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| || || | ||||| ||||| |||||||| Sbjct 305136 AGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 305093 Score = 104 bits (114), Expect = 5e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || |||||||| | ||| || || |||||||||||||| | Sbjct 305092 ACCACCTCGGAGTCGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 305033 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || ||||| || || | || || ||||| || Sbjct 305032 CAGAGTTCGTCCGTCCTCGAGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGG 304973 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || ||| | ||||| ||||| || | ||||| Sbjct 304972 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGAC 304913 >seq4 Length=2565013 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || || || || | ||| || || |||||||||||||||| Sbjct 110118 ACCTCCTCGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 110177 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || ||||| || |||| || || ||||| || Sbjct 110178 AAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGG 110237 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | || || ||||| |||| || || Sbjct 110238 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 110297 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 ||||| ||||| ||||| || || | ||||| || || || |||| Sbjct 110298 CTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 110344 >seq1 Length=3339266 Score = 116 bits (128), Expect = 8e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079 |||| || ||||| || || | ||| ||||| |||| || | |||||| || ||||| Sbjct 1183214 TCCTGGGTGGGGAAACCCTCAACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTA 1183273 Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139 |||||||| |||||||| || ||||| || || || ||| || || |||| Sbjct 1183274 CCAGCACCGTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTTGAGTCGAAGCTGGGTT 1183333 Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199 |||||| |||||||| |||| || ||||||||||||||||| | |||||| ||||| Sbjct 1183334 CGGTTCAGCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCT 1183393 Query 317200 CC 317201 || Sbjct 1183394 CC 1183395 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 315708 GAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTG 315767 |||| ||||| |||| | ||||||| ||||||||||||||||| | |||||| | || Sbjct 1181874 GAGAGTCTCGA--TCCAGATAGTTGGTAGGCTCATCAAGAACGATCAGATGGGGTCGCTG 1181931 Query 315768 CCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCG 315827 ||| | |||| | | || ||||| | || || ||||||||||| || ||||| || Sbjct 1181932 CCAGGTACAGGCGGCAAGCACCAGCTTGACCTTCTGTCCACCAGACAGACCTCGGATTCG 1181991 Query 315828 AGAATGAGTGGTAAATTCTGGGTCAAGGCCAA 315859 || |||| | || || || || || |||| Sbjct 1181992 GGAGTGAGAGACAAGCTCGGGCTCGAGACCAA 1182023 >seq3 Length=2716294 Score = 102 bits (112), Expect = 2e-16 Identities = 564/889 (63%), Gaps = 34/889 (4%) Strand=Plus/Minus Query 229535 CTTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTG 229594 |||||| || || |||| ||| ||||| | ||||| |||||||| | ||| | || || Sbjct 857459 CTTCCCCATCCAGTACCACGAGATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTG 857400 Query 229595 GACCACGGAGGAAGTCCCCCTAAATGCA--GACGTCGTCGACTGGCGCGAGAAAC---TC 229649 |||| | ||||| | || ||| ||| | | ||||||| ||||| | || Sbjct 857399 GACCGCCGAGGAGATTGATCTCG--GCAAGGACATGGGCGACTGG---GAGAACCGGCTC 857345 Query 229650 AACGACGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGT 229709 ||| |||| || || |||||| |||| | || | || ||||| | |||||| ||| Sbjct 857344 AACAACGACGAGCGGTTCTTCATCTCGCACGTGCTGGCCTTCTTTGCTGCTTCCGATGGT 857285 Query 229710 ATCGTGATGGAAAACTTGCAGACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACGG 229769 || |||| || ||| || | ||| || ||| || |||||| ||||| | Sbjct 857284 ATTGTGAACGAGAACCTGGTGGAGCGATTCTCCGGCGAGGTGCAGGTCCCCGAGGCCAAG 857225 Query 229770 CAGTTTTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCTT 229829 || |||| | ||||| | | || | || |||||| ||| | || || Sbjct 857224 TGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTACTCGCTGCTG 857165 Query 229830 ATTGACGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAAC 229889 || ||| | ||| ||| ||||| || | |||||| |||||||||| | | Sbjct 857164 ATCGACACATACATCAAGGACCCCAAGGAGCGAACCTACCTGTTCAACGCCATCGAGACC 857105 Query 229890 ATCCCGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGG--CTGGAAC--CCAGTAA 229945 ||||| || | || || || ||||| | |||||| || || | ||| Sbjct 857104 ATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCG 857045 Query 229946 ATCGTTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGAG 230005 | | || || ||||| || | || | | ||| ||||| || | |||||||| Sbjct 857044 ACCTTTGGC-GAGCGGCTGATAGCTTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTC 856986 Query 230006 TTTCTGCGCCATCTTTTGGCT-ACGCAACAAGGGCGTCATGCCCGGGCTCGGTCTGTCGA 230064 ||| | ||||||| ||||| | | | | ||| | |||||||||| ||| | || | Sbjct 856985 GTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCCGGCCTCACCTTCTCCA 856927 Query 230065 ACGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTC-- 230122 |||| ||||| | | ||||| ||||| ||| | |||| | |||| | ||| Sbjct 856926 ACGAGCTCATCTCCCGAGACGAGGGTCTGCACACCGACTTTGCCT--GTCTGCTCTTCTC 856869 Query 230123 GAAGCTAAATAACAAACTACCTTTCGAAACGGT------GAAACAAATCGTCACAGAAGT 230176 | | || | ||| | ||| | | | | | | | | || ||| || | Sbjct 856868 GCACCTCGAGAAC---CGACCCTCCAAGAAGATTGTCGAGGACGTGATTGTC---GAGGC 856815 Query 230177 AGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAA 230236 |||| | || |||||||| | |||||| | || || |||| |||| ||||| Sbjct 856814 CGTTGGTATCGAGCAGGAGTTCCTGACCGACGCCCTGCCCTGTGGTCTGCTCGGAATGAA 856755 Query 230237 TGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGG 230296 || | |||||| | || || || || || || || || ||| | | || || || || Sbjct 856754 CGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCTCTCGG 856695 Query 230297 GTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCA 230356 || || || || ||||||| |||||||||| || |||||| ||| || || Sbjct 856694 CAACTCCAAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGC 856635 Query 230357 GGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 || || || ||||||||||| ||||| || ||| || || |||||| Sbjct 856634 CGGCAAGACCAACTTCTTCGAGAAGCGGGTGTCCGACTACCAGAAGGCC 856586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738650134814