Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 132 1e-25 seq5 111 3e-19 >seq2 Length=3052417 Score = 132 bits (146), Expect = 1e-25 Identities = 284/423 (67%), Gaps = 6/423 (1%) Strand=Plus/Minus Query 230218 TTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTC 230277 || ||||| |||| | ||||||| ||||| ||| |||| | |||||||||||| Sbjct 506998 TTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTC 506939 Query 230278 GGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT 230337 | || |||||| ||||| || ||||||||||| || | || | | || Sbjct 506938 ACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTG 506879 Query 230338 ATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACA 230394 | | || | || ||||| | ||| | ||| | || | | ||||| Sbjct 506878 CTTTTCTCGCACCTTGAGAAC---CGACCCTCAAAGAAGATTGTTGAGGACGTCATTGTC 506822 Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC 230454 || || |||| | ||| |||||||| || ||||||| | || ||| | || |||| Sbjct 506821 GAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGT 506762 Query 230455 ATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCA 230514 |||||||| | || ||| | ||||||||||| || || || ||||| | | ||||| Sbjct 506761 ATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCT 506702 Query 230515 CTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCG 230574 || ||| || || ||||| ||||| | |||||||| | || |||||| ||| || Sbjct 506701 CTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCT 506642 Query 230575 CTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634 || || ||||||||||| ||||| ||||| || ||||| |||| | | ||||| Sbjct 506641 CTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCAGAAGGCCGGTGTC 506582 Query 230635 ATG 230637 ||| Sbjct 506581 ATG 506579 >seq5 Length=4047401 Score = 111 bits (122), Expect = 3e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || | ||| ||||| |||| || ||||||||||| || ||||| || || Sbjct 1593193 GGGGAAACCCTCGACCTGACCGTTGGCAATGGCTCGCATCAGGGTGGACTTACCAGCACC 1593134 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || ||||| |||||||| || || || || || | | | || |||||| Sbjct 1593133 GTTAGGACCACAGAGACCGTATCGTCGGCCTCGCTTGAGTCGCAGCTGGGTTCGGTTCAG 1593074 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 ||||| || |||| || |||||||| || ||||| | |||||||||||| || Sbjct 1593073 CAGAATCTTAGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCGCC 1593020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823606952270