Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq2 132 1e-25
seq5 111 3e-19
>seq2
Length=3052417
Score = 132 bits (146), Expect = 1e-25
Identities = 284/423 (67%), Gaps = 6/423 (1%)
Strand=Plus/Minus
Query 230218 TTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTC 230277
|| ||||| |||| | ||||||| ||||| ||| |||| | ||||||||||||
Sbjct 506998 TTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTC 506939
Query 230278 GGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT 230337
| || |||||| ||||| || ||||||||||| || | || | | ||
Sbjct 506938 ACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTG 506879
Query 230338 ATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACA 230394
| | || | || ||||| | ||| | ||| | || | | |||||
Sbjct 506878 CTTTTCTCGCACCTTGAGAAC---CGACCCTCAAAGAAGATTGTTGAGGACGTCATTGTC 506822
Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC 230454
|| || |||| | ||| |||||||| || ||||||| | || ||| | || ||||
Sbjct 506821 GAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGT 506762
Query 230455 ATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCA 230514
|||||||| | || ||| | ||||||||||| || || || ||||| | | |||||
Sbjct 506761 ATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCT 506702
Query 230515 CTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCG 230574
|| ||| || || ||||| ||||| | |||||||| | || |||||| ||| ||
Sbjct 506701 CTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCT 506642
Query 230575 CTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634
|| || ||||||||||| ||||| ||||| || ||||| |||| | | |||||
Sbjct 506641 CTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCAGAAGGCCGGTGTC 506582
Query 230635 ATG 230637
|||
Sbjct 506581 ATG 506579
>seq5
Length=4047401
Score = 111 bits (122), Expect = 3e-19
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916
|||||| || || | ||| ||||| |||| || ||||||||||| || ||||| || ||
Sbjct 1593193 GGGGAAACCCTCGACCTGACCGTTGGCAATGGCTCGCATCAGGGTGGACTTACCAGCACC 1593134
Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976
||| || ||||| |||||||| || || || || || | | | || ||||||
Sbjct 1593133 GTTAGGACCACAGAGACCGTATCGTCGGCCTCGCTTGAGTCGCAGCTGGGTTCGGTTCAG 1593074
Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030
||||| || |||| || |||||||| || ||||| | |||||||||||| ||
Sbjct 1593073 CAGAATCTTAGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCGCC 1593020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823606952270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |