Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq6 141 1e-28 seq4 87.8 2e-12 >seq2 Length=3052417 Score = 150 bits (166), Expect = 2e-31 Identities = 381/574 (66%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| ||||||||||||| || | |||||||| || ||||| || ||||| || || Sbjct 506897 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 506956 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 ||||| || ||||| || ||||| || || || || || ||||| || || || || || Sbjct 506957 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 507016 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGG-CGCT--GTCATGTATCCACTTTTGAGC 24325 ||||||||||| |||| |||||| | || | || ||| |||||||| | || Sbjct 507017 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 507076 Query 24326 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 24385 ||| |||||||| || || | || || || ||||| || || || || || ||| || Sbjct 507077 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 507136 Query 24386 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 || || || || | ||||| || |||| || || | || || || ||||| Sbjct 507137 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 507196 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACA 24505 || || || || || |||||||| || | ||||||| ||| || || | Sbjct 507197 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 507256 Query 24506 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 ||||| || | | || || || || || ||||| ||| ||||| || || | || Sbjct 507257 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 507316 Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT---TTATTCCAATCATTGATATCTT 24621 || || || | || || | |||| ||| || | ||| ||| || || | Sbjct 507317 GTGGGAGATGAAGAACCGCTCATC-GTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT 507375 Query 24622 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 24681 | | ||| | || || ||||||| || || ||||| ||||| || ||||| | || Sbjct 507376 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 507435 Query 24682 AGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||| || || || || || || || | ||||| Sbjct 507436 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 507469 >seq6 Length=3777980 Score = 141 bits (156), Expect = 1e-28 Identities = 453/700 (65%), Gaps = 2/700 (0%) Strand=Plus/Minus Query 53953 AAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCA 54012 |||||| || || | || | ||| | || || || || | || ||||||| | ||| Sbjct 3775709 AAACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCA 3775650 Query 54013 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 54072 || ||| | || ||||| | ||| || || || || ||||| ||||| | || || Sbjct 3775649 TTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAG 3775590 Query 54073 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 54132 |||| || || | || || ||||| |||||| || ||| |||| | | || Sbjct 3775589 GTCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGAT 3775530 Query 54133 ATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTG 54192 ||| ||||| || || | ||| || | | | ||||| || ||||| |||||||| Sbjct 3775529 ATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTG 3775470 Query 54193 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGC 54252 ||| | ||||| |||||||| ||||| || | || ||| || | ||||| ||||| | Sbjct 3775469 ATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGT 3775410 Query 54253 ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTAT 54312 || || || || | || ||| ||| | || || || || || || ||||| || Sbjct 3775409 TCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGAT 3775350 Query 54313 CCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 54372 || || || || || || | || || ||| | ||||| |||||||| || || Sbjct 3775349 ACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGAT 3775290 Query 54373 ACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 54432 || ||| ||||||| | || ||||| ||||| || | | |||||| || Sbjct 3775289 GGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGC 3775230 Query 54433 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCT 54491 || | | || || |||||||| || || | || | ||| | ||| ||||| |||| Sbjct 3775229 GTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAG-TTGTAGGTCT 3775171 Query 54492 CGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 54551 | || || | | || | || || || || | ||| ||||| | ||| || | Sbjct 3775170 CAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATCTGTT 3775111 Query 54552 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAA 54611 | |||| || | | ||| | | ||||| ||| | | |||| || || | Sbjct 3775110 GGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGGGTCTTGA 3775051 Query 54612 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 | ||||| |||||||| | |||||||| ||||| | ||| Sbjct 3775050 AGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 3775011 >seq4 Length=3654803 Score = 87.8 bits (96), Expect = 2e-12 Identities = 458/713 (64%), Gaps = 30/713 (4%) Strand=Plus/Plus Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAA 54006 || || || || ||||||||||||| | ||| || || | || | ||||| | | Sbjct 397955 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTCTG-GGACAGAAAAG 398013 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 ||||||| | || ||| || ||| |||||| || ||||| | ||| | || Sbjct 398014 AGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGTA 398073 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAA 54123 || || || | || || || ||||||| || || ||||| |||| ||||| Sbjct 398074 GAAGAGGTCACGGGCTCGATTTTCCTCGGCACC---ATGGTTTTTGCGCAGATTCAGGAA 398130 Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183 ||| ||| || | |||||| || ||||| || | | | |||| || |||||||| Sbjct 398131 ATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTT 398190 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| || || | ||| | ||| ||||| || | ||||| | ||| |||| || || Sbjct 398191 TCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCC 398250 Query 54244 ATTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAAT-T 54301 |||| || | | ||| | || | ||| ||| |||| | ||| || || | Sbjct 398251 GGAGGATCTTCCTTGAGACCCAGTAATGAGAGC-TCCCTTGGCTCTAATGTTGTGGATAT 398309 Query 54302 GATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATA 54360 | || || || || || || |||| |||||| || || |||||| | ||| || || Sbjct 398310 GCAAG-CCGATACCTCCGGCGGTTTTGGAGATTTGGGCACA-CGTTTTGAGCGTGTCGTA 398367 Query 54361 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 54420 |||||| || || || | |||| | || |||||| || | |||| | Sbjct 398368 GATGCCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTG 398427 Query 54421 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TA 54479 ||||| ||||| || || |||||||| || || || || ||||| || | | Sbjct 398428 GGGGGTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA----TTTTCTGAGCGACA 398483 Query 54480 GA---TTGTACGTCTCGATAGC--TGAGTCTAT-ATC-CCATTGATGAATTCCTACTGCG 54532 || | ||| || ||| | ||| ||| ||| |||| |||| || | || Sbjct 398484 GAGCCTGGTAGGTTTCGCGCACCTTGAAAATATCATCTCCATGGATG----CCCAGGGCC 398539 Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAG 54592 || ||||| ||||| || ||||||| || || | || | | | ||| ||||| Sbjct 398540 ACTCGCATCAACATATGTTGAGGTCGCTCCACCACGTTTCCGCCAACTCTCAATAAGTAT 398599 Query 54593 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 54645 || || |||| || || || ||||| ||| ||| | | |||||| | ||| Sbjct 398600 GACTTCTCCAGGGTCTTGAATCCAAAGTAGGAGTAAGTCATGTCTCGGTAGTA 398652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721384775920