Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 417 8e-112 seq6 141 1e-28 seq5 96.9 4e-15 >seq2 Length=3052417 Score = 417 bits (462), Expect = 8e-112 Identities = 615/861 (71%), Gaps = 11/861 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| ||||||| || ||||| ||| | |||||||| || |||| || Sbjct 507499 GAGCCTCTGCTCAAGGAGAACCATCGACGGTTTGTGCTCTTCCCCATCCAGTACCACGAA 507440 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | || || Sbjct 507439 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAGGAGATTGATCTT 507380 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||| | | ||||||||| | | ||| || | ||||| |||||| Sbjct 507379 GGAAAGGACATGGGTGACTGGGAGAACAGACTCAACAACGATGAGCGGTTCTTCATCTCC 507320 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || || || ||| |||||| ||||| |||||||| ||||| ||||| Sbjct 507319 CACGTTCTCGCATTCTTTGCTGCCTCCGACGGTATCGTTAACGAGAACCTGGTTGAGCGA 507260 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | |||||||||| ||||||| ||||||||||||||| |||||| ||| Sbjct 507259 TTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATG 507200 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGC-GCTCTTCGGA 116931 |||||| | ||||| || | || ||| || |||||||| ||| | | | | | Sbjct 507199 GAGAACATCCACTCCGAGACCTACTCGCTGCTGATCGACACATACATCAAGGACCCCAAA 507140 Query 116932 G-GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 | | ||| || | | ||| |||||||||||||| || || ||| |||| | ||||||| Sbjct 507139 GAGCGAACCTACCT--GTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCG 507082 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050 | ||||| || |||||| ||| | |||| || |||| || ||||| || | |||| Sbjct 507081 ACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGACTCATTGCCT 507022 Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 | || |||||||||||| ||||||| || ||| ||||||| |||| || |||||||||| Sbjct 507021 TTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGA 506962 Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170 | || || |||||||| ||||| || ||| |||||||||||||||| | |||||||||| Sbjct 506961 AGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTC 506902 Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGC 117230 |||| ||||||||||| |||| ||| ||| | | | | ||||| | | Sbjct 506901 TGCACACTGACTTTGCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCCTCAAAGAAGA 506842 Query 117231 GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGC 117290 || ||| || | ||| || || | |||||||||| ||||| || || || | Sbjct 506841 TTGTTGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTC 506782 Query 117291 TG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGT 117348 || || ||| ||||||| || | || || || | ||||| || ||||||||||| || Sbjct 506781 TGCCCTGTG-GTCTGCTTGGTATGAA-CGCCAAGCTGATGTGCCAGTACATCGAGTTTGT 506724 Query 117349 CGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCT 117408 ||| ||| | ||||| | | || | | ||||| || ||| | ||||||| | Sbjct 506723 CGCTGACCGTCTGCTAGTTGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTT 506664 Query 117409 GGACTTTATGAACCTCATCTC 117429 ||||| ||| | |||||| Sbjct 506663 CGACTTCATGGAGAACATCTC 506643 >seq6 Length=3777980 Score = 141 bits (156), Expect = 1e-28 Identities = 162/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| || || || || || || ||||| || |||||| |||| || || || | | Sbjct 1244985 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1245044 Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | |||| ||||| || || | ||||| ||||| |||||| |||||||| Sbjct 1245045 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 1245103 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| ||| || || ||||| || |||| || || || |||||||||| Sbjct 1245104 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAAC 1245163 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| || ||||| || |||| Sbjct 1245164 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 1245198 Score = 134 bits (148), Expect = 1e-26 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || || || || || || || || || || |||||| |||| || || | Sbjct 1363673 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTT 1363732 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | |||| ||||| || || | ||||| ||||| || ||| ||||| Sbjct 1363733 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 1363791 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||| |||| ||| || || ||||| || |||| || ||||| |||||| Sbjct 1363792 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 1363851 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||| |||| || ||||| || |||| Sbjct 1363852 AACATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCG 1363889 >seq5 Length=4047401 Score = 96.9 bits (106), Expect = 4e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 40738 GTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCAT 40796 ||||| || |||||| | | | |||| ||||| || |||| ||||| ||||| || Sbjct 2183883 GTCGAGTCCTCCGACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAAT 2183941 Query 40797 CCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856 || |||||||||| ||||| || | ||| || || ||||| || || | || ||||| Sbjct 2183942 TCCTCCGGACCAGCAGCGACTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCT 2184001 Query 40857 CAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| ||||||||| |||| || ||||| || Sbjct 2184002 GTCTGACTACAACATTCAGAAGGAGTCCACTCTCCATCTCGT 2184043 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| || ||| |||||||||| ||||| || | || || || Sbjct 2184321 AAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTGATTTTTGCTGGTAAG 2184380 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | || || || |||||||||||||||||||||| |||| || ||| Sbjct 2184381 CAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAT 2184440 Query 40894 CTAGT 40898 || || Sbjct 2184441 CTCGT 2184445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219013233040