Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq2 91.5 1e-13 seq5 89.7 4e-13 seq4 84.2 2e-11 >seq6 Length=3777980 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | || || || | |||| || ||||| || || |||||||| ||| Sbjct 1245212 TACCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 1245153 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||||||||||| || || ||| |||| || |||||||| || || | Sbjct 1245152 AAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGG 1245093 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | || | |||||| | | ||| | Sbjct 1245092 GGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCA 1245033 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTA 118744 |||||| ||| | || ||||| || || || || ||||| || |||| ||| ||| Sbjct 1245032 CCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTA 1244977 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| || | || || ||||||||||| Sbjct 1363877 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGC 1363818 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| || |||||||| || || || || ||||||||||| || || Sbjct 1363817 TTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 1363758 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | ||| ||||||| ||| | || || ||||| Sbjct 1363757 GACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTA 1363698 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||||||||| Sbjct 1363697 AGGGTCTTGACAAAAATCTGCAT 1363675 >seq2 Length=3052417 Score = 91.5 bits (100), Expect = 1e-13 Identities = 347/534 (65%), Gaps = 23/534 (4%) Strand=Plus/Minus Query 44778 TCGAGAATATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATG 44837 |||||| || |||||| | | ||||||||| ||||| | |||| || ||| | Sbjct 507114 TCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACG 507055 Query 44838 AAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTT 44897 || || || || | || ||| | | || || ||| ||||| || | ||||| | Sbjct 507054 AAGAGTCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCT 506995 Query 44898 CGGGGAGTTTTGCGGCGATATTTTACATGAA-AACCAAGGGAGTGATGCCCGGACTGACG 44956 | || ||| || | || || | | || || | ||| | ||||| || || || Sbjct 506994 CCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACC 506936 Query 44957 TTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCT-CTA 45015 || |||||| | || || ||||||| ||||||||||| ||||||||||||| || Sbjct 506935 TTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTT 506876 Query 45016 CTATAATAC---GAGAGTCGA---TCAAAAGTTGGACGCGCCCACCGTCAACGACATGTT 45069 | | || |||| ||| ||||| || | | || | ||| | | Sbjct 506875 TTCTCGCACCTTGAGAACCGACCCTCAAA-----GAAG-----ATTGTTGAGGACGTCAT 506826 Query 45070 CTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGT-TGG 45128 ||| || || | ||||||| ||| || || |||| ||||||||| | || || Sbjct 506825 TGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTG-TGGTCTGC 506767 Query 45129 TGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCG 45188 | || |||||||| || ||||| | ||||||| ||||||||||| || ||||| || | Sbjct 506766 TTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAG 506707 Query 45189 TCCAGTTAAAGTATC-CCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAAT 45247 | | ||| | ||||| |||| | | ||||| ||||| || ||| | || Sbjct 506706 T-TGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAAC 506648 Query 45248 ATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301 || || ||| ||||| || || ||||| ||||| || || ||| ||| || Sbjct 506647 ATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCAG 506594 >seq5 Length=4047401 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || ||||||||||| || || || || |||||||||||| Sbjct 2184037 TGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGC 2183978 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| | || || |||||||| || ||||| || ||||||||||| ||| || Sbjct 2183977 TTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATCTTG 2183918 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCT 118692 || || | |||| |||||| | | |||||||| Sbjct 2183917 GACTTGACGTTGTCGATGGTGTCGGAGGACTCGACCT 2183881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||||||||| || ||||| | || || |||||||| || || || || |||||||| Sbjct 2184218 ATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTT 2184159 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| ||| || || || | || | ||||| | ||| ||||||| || | Sbjct 2184158 GTCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTGAT 2184099 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||| || || ||||||||||| Sbjct 2184098 GGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063 >seq4 Length=3654803 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 133188 ATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCG 133247 ||| | || | |||||| |||| | || ||||||| ||||| ||||||| || || Sbjct 397103 ATGCCCAGTTTGATTAGATCTTTCATCAGCCACTGGTTCACCACGAGAAACTCACCAGCC 397162 Query 133248 AGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGT 133307 | || || | || || | || |||||| ||||||||||| | ||||||| ||| || Sbjct 397163 TGGACCCGACGAAGGTAAATGTTGGACGTGTACGGTTCGAAACACTCGTTGTGGCCCAGA 397222 Query 133308 ATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTC 133356 ||||||| || | || || |||||| || || | | |||||||| Sbjct 397223 ATCTGCGATGTGGAAGCTGTAGGCATGGGGGCAACAAGTAGAGAGTTTC 397271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830246668068