Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1 145 2e-29
seq6 89.7 1e-12
>seq1
Length=2339597
Score = 145 bits (160), Expect = 2e-29
Identities = 268/392 (68%), Gaps = 26/392 (7%)
Strand=Plus/Plus
Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070
|||| ||| |||| ||||||||||| || || ||||| ||| | || || |||||| |
Sbjct 461487 TGCTATTCTACGGCCCTCCCGGAACTGGAAAAACGTCGACCGTGCTCGCCCTGGCCAAAG 461546
Query 254071 CCCTGTTGGGCGAGGGGAA--CATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGA 254128
|||| | || ||| ||||| || || ||||| ||||| ||||| || |||||
Sbjct 461547 AGCTGTACG--GACCTGAACTCATGAAGGATCGAGTGCTGGAGCTCAACGCGTCGGACGA 461604
Query 254129 ACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC------CAAG-------- 254174
||| || | | | |||| || |||| ||||||| ||| | |||
Sbjct 461605 ACGAGGAATCGCCATCGTGCGAGACAGCATCAAGAATTTTGCGGCGCAGAAGGTGGTTGC 461664
Query 254175 -----ATGTCGATTTCGTCG-TTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTG 254228
| | | || | | || |||| ||||||||| |||||| || | ||||||
Sbjct 461665 ACCCAAAGACCATATTGCCGAAAAGTACCC--CTGTCCGCCATTCAAGATCATCATCCTG 461722
Query 254229 GACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACG 254288
|| ||||| ||| ||||||| | ||||| ||| || || || ||||| |||||||||
Sbjct 461723 GATGAGGCAGACTCCATGACTACAGACGCCCAGAGTGCTCTGCGACGAACTATGGAGACG 461782
Query 254289 CACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCG 254348
|||| | ||| || || ||||| | || ||||| ||| | ||||||| ||||
Sbjct 461783 TACTCGGCCCAGACCCGGTTCTGCCTCATCTGTAACTATGTGACCCGAATCATCGACCCG 461842
Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATTCAG 254380
|| || ||||| ||| ||||||| ||||| ||
Sbjct 461843 CTAGCGTCTCGATGCTCCAAGTTCCGATTTAG 461874
>seq6
Length=3777980
Score = 89.7 bits (98), Expect = 1e-12
Identities = 165/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 249864 GTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACAT 249923
||| |||||| ||||| || || ||||| || |||| ||| |||| || |||
Sbjct 3776096 GTCTAACATGCGACACCGACCCATTGCTCTGGGTGTCCAGGGTCTGGCCGACACCTTCAT 3776155
Query 249924 GGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAATAAACAGATTTTCGA 249983
|| | || |||| || ||||| |||||||| || ||| || | ||||| |||||
Sbjct 3776156 GGCTCTACGACTCCCATTTGAGTCCGAGGAGGCCAAGAAGCTCAACATCCAGATCTTCGA 3776215
Query 249984 GACCATCTATCACGGGAGC-GTCGAGGCGTCCATCGAAAGGGC-CAAGATCGACGGACCA 250041
||||||||| ||| ||||| ||||| || || ||| | ||| | || ||||| |
Sbjct 3776216 GACCATCTACCAC-GGAGCTGTCGAAGCCTCTTACGAGATGGCTCTTGA-GGACGGTGCC 3776273
Query 250042 TACGAGAGTTTTCAGGGGTCGCCCGCGTCGTTCGGGAAGCTTCAGTTTGATCTTTGG 250098
||||||| || ||||| || || || || || | || ||||| ||||| |||
Sbjct 3776274 TACGAGACCTTCCAGGGCTCCCCTGCCTCCAAGGGTGACCTCCAGTTCGATCTCTGG 3776330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073766001028672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |