Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 145 2e-29 seq6 89.7 1e-12 >seq1 Length=2339597 Score = 145 bits (160), Expect = 2e-29 Identities = 268/392 (68%), Gaps = 26/392 (7%) Strand=Plus/Plus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| |||| ||||||||||| || || ||||| ||| | || || |||||| | Sbjct 461487 TGCTATTCTACGGCCCTCCCGGAACTGGAAAAACGTCGACCGTGCTCGCCCTGGCCAAAG 461546 Query 254071 CCCTGTTGGGCGAGGGGAA--CATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGA 254128 |||| | || ||| ||||| || || ||||| ||||| ||||| || ||||| Sbjct 461547 AGCTGTACG--GACCTGAACTCATGAAGGATCGAGTGCTGGAGCTCAACGCGTCGGACGA 461604 Query 254129 ACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC------CAAG-------- 254174 ||| || | | | |||| || |||| ||||||| ||| | ||| Sbjct 461605 ACGAGGAATCGCCATCGTGCGAGACAGCATCAAGAATTTTGCGGCGCAGAAGGTGGTTGC 461664 Query 254175 -----ATGTCGATTTCGTCG-TTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTG 254228 | | | || | | || |||| ||||||||| |||||| || | |||||| Sbjct 461665 ACCCAAAGACCATATTGCCGAAAAGTACCC--CTGTCCGCCATTCAAGATCATCATCCTG 461722 Query 254229 GACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACG 254288 || ||||| ||| ||||||| | ||||| ||| || || || ||||| ||||||||| Sbjct 461723 GATGAGGCAGACTCCATGACTACAGACGCCCAGAGTGCTCTGCGACGAACTATGGAGACG 461782 Query 254289 CACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCG 254348 |||| | ||| || || ||||| | || ||||| ||| | ||||||| |||| Sbjct 461783 TACTCGGCCCAGACCCGGTTCTGCCTCATCTGTAACTATGTGACCCGAATCATCGACCCG 461842 Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATTCAG 254380 || || ||||| ||| ||||||| ||||| || Sbjct 461843 CTAGCGTCTCGATGCTCCAAGTTCCGATTTAG 461874 >seq6 Length=3777980 Score = 89.7 bits (98), Expect = 1e-12 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 249864 GTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACAT 249923 ||| |||||| ||||| || || ||||| || |||| ||| |||| || ||| Sbjct 3776096 GTCTAACATGCGACACCGACCCATTGCTCTGGGTGTCCAGGGTCTGGCCGACACCTTCAT 3776155 Query 249924 GGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAATAAACAGATTTTCGA 249983 || | || |||| || ||||| |||||||| || ||| || | ||||| ||||| Sbjct 3776156 GGCTCTACGACTCCCATTTGAGTCCGAGGAGGCCAAGAAGCTCAACATCCAGATCTTCGA 3776215 Query 249984 GACCATCTATCACGGGAGC-GTCGAGGCGTCCATCGAAAGGGC-CAAGATCGACGGACCA 250041 ||||||||| ||| ||||| ||||| || || ||| | ||| | || ||||| | Sbjct 3776216 GACCATCTACCAC-GGAGCTGTCGAAGCCTCTTACGAGATGGCTCTTGA-GGACGGTGCC 3776273 Query 250042 TACGAGAGTTTTCAGGGGTCGCCCGCGTCGTTCGGGAAGCTTCAGTTTGATCTTTGG 250098 ||||||| || ||||| || || || || || | || ||||| ||||| ||| Sbjct 3776274 TACGAGACCTTCCAGGGCTCCCCTGCCTCCAAGGGTGACCTCCAGTTCGATCTCTGG 3776330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766001028672