Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 1e-12 seq5 82.4 6e-11 >seq6 Length=3777980 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| ||||||||||| || || |||| || || || Sbjct 1363877 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGC 1363818 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| || | ||||| ||||| || || | |||||||||||| || || Sbjct 1363817 TTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 1363758 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| | ||||||||| | ||| || ||||| || || Sbjct 1363757 GACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTA 1363698 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| || ||||| Sbjct 1363697 AGGGTCTTGACAAAAATCTGCAT 1363675 >seq5 Length=4047401 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/122 (75%), Gaps = 6/122 (5%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGT 45190 || || ||| ||||||||||||||||||||| ||| | ||| ||| ||| || Sbjct 2184037 TGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGGCCATCCTCG---AGC 2183981 Query 45191 TGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATT 45250 || || |||||||| |||| ||||| ||||| ||||| | |||||||||||| ||| Sbjct 2183980 TGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATC 2183921 Query 45251 TT 45252 || Sbjct 2183920 TT 2183919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075060365609