Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3 102 2e-16 seq6 96.9 7e-15 >seq3 Length=3339761 Score = 102 bits (112), Expect = 2e-16 Identities = 384/597 (64%), Gaps = 24/597 (4%) Strand=Plus/Plus Query 35150 GACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCC---AAATGAGGTTCTCT 35206 ||||| |||| || || || ||||| || | |||| |||| | | | ||| | Sbjct 1501612 GACGACCGAACCGGCACCGGGACTCTCTCTCTGTTTGCCCCCCCTCAGCTTCGATTCGAT 1501671 Query 35207 CT-TCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGT 35265 || || | |||||| | |||| | ||||| |||||| | | |||| |||| ||| | Sbjct 1501672 CTGTCCA-ACGACATTCTTCCCCTGCTCACCACCAAGCGAGTCTTCTACCGAGGCGTTCT 1501730 Query 35266 GGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAA 35325 ||| || || | |||||| | || || |||| |||| || || | |||| || Sbjct 1501731 GGAGGAGCTTTTGTGGTTTGTGGCTGGATGCACCGACGGCAAAAAACTGAGCGAGAAAAA 1501790 Query 35326 GATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGA 35385 || ||||||||| ||| ||||| || ||| || |||| | ||| | | | Sbjct 1501791 CATTCACATCTGGGACGGAAATGGATCTAAGGAGTTCCTGGAAAAGGCCGGGCTGGGCCA 1501850 Query 35386 TAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGA 35445 ||| ||||||||| ||||||| || || || ||||||||||| ||||| || || || Sbjct 1501851 CAGACGAGAGGGAGACCTGGGACCGGTCTATGGCTTCCAATGGCGCCATTTCGGAGCCGA 1501910 Query 35446 ATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATA--TA 35503 || | | ||| | ||||| ||||| | || | || || | | || | | Sbjct 1501911 GTACAAGAATTGTGACACGGATTACACTGGCCAAGGCGTGGACCAGCT--CAAACAGGTG 1501968 Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563 || | || || ||| || || | || | | || ||| || | |||||||| || Sbjct 1501969 ATACACACTCTCAGAACCAACCCTCACGACCGTCGAATCATTCTGTCTGCATGGAACCCC 1502028 Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGC- 35622 ||||| | ||||| |||||||| || |||||| | || ||||||||| | Sbjct 1502029 GCCGATCTCCCAAAGATGGCGCTTCCTCCCTGTCACATGTTTTGCCAGTTTTATGTGTCG 1502088 Query 35623 TA-----------ATGGAGAA---TTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTC 35668 || | ||| | ||||||| ||| ||||||||||| | || | Sbjct 1502089 TACAAAAACTCGGAACGAGGACGTCTGTCGTGTCAGCTGTATCAGCGATCATGTGACCTG 1502148 Query 35669 GGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCC 35725 || | || || |||||||| ||||| || ||| |||| || || | |||| ||| Sbjct 1502149 GGTCTTGGAGTCCCCTTCAACATTGCCTCCTACGCTCTGCTCACCCGAATGATTGCC 1502205 >seq6 Length=3777980 Score = 96.9 bits (106), Expect = 7e-15 Identities = 140/195 (72%), Gaps = 17/195 (9%) Strand=Plus/Minus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| || | |||||||| | ||||||||| || |||| ||||||| ||| || ||||| Sbjct 3775733 CTCGTACTGCTCGTACAGCTGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCA 3775674 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC------ACTCTCTCCATGAA 94520 ||||| |||||||||||||| ||| | |||| ||| |||| ||||||||| Sbjct 3775673 CTCGTTGGGGCACATCAGGGTCCATT------CAGCGTTCTGCTCGACTCGCTCCATGAA 3775620 Query 94521 GAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAA--TCTTCATTACCG 94578 || || | | ||| | ||| |||| || | |||| ||| || ||||| || ||| Sbjct 3775619 CAGGTCGGGGATCCACAGAGCCAGGAACAGGT--CTCGGGCTCGAATCTCTTCCTTTCCG 3775562 Query 94579 GCATTCTTTCTGCAG 94593 ||||||| |||| Sbjct 3775561 TGGTTCTTTC-GCAG 3775548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583632307695