Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq3 102 2e-16
seq6 96.9 7e-15
>seq3
Length=3339761
Score = 102 bits (112), Expect = 2e-16
Identities = 384/597 (64%), Gaps = 24/597 (4%)
Strand=Plus/Plus
Query 35150 GACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCC---AAATGAGGTTCTCT 35206
||||| |||| || || || ||||| || | |||| |||| | | | ||| |
Sbjct 1501612 GACGACCGAACCGGCACCGGGACTCTCTCTCTGTTTGCCCCCCCTCAGCTTCGATTCGAT 1501671
Query 35207 CT-TCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGT 35265
|| || | |||||| | |||| | ||||| |||||| | | |||| |||| ||| |
Sbjct 1501672 CTGTCCA-ACGACATTCTTCCCCTGCTCACCACCAAGCGAGTCTTCTACCGAGGCGTTCT 1501730
Query 35266 GGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAA 35325
||| || || | |||||| | || || |||| |||| || || | |||| ||
Sbjct 1501731 GGAGGAGCTTTTGTGGTTTGTGGCTGGATGCACCGACGGCAAAAAACTGAGCGAGAAAAA 1501790
Query 35326 GATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGA 35385
|| ||||||||| ||| ||||| || ||| || |||| | ||| | | |
Sbjct 1501791 CATTCACATCTGGGACGGAAATGGATCTAAGGAGTTCCTGGAAAAGGCCGGGCTGGGCCA 1501850
Query 35386 TAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGA 35445
||| ||||||||| ||||||| || || || ||||||||||| ||||| || || ||
Sbjct 1501851 CAGACGAGAGGGAGACCTGGGACCGGTCTATGGCTTCCAATGGCGCCATTTCGGAGCCGA 1501910
Query 35446 ATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATA--TA 35503
|| | | ||| | ||||| ||||| | || | || || | | || | |
Sbjct 1501911 GTACAAGAATTGTGACACGGATTACACTGGCCAAGGCGTGGACCAGCT--CAAACAGGTG 1501968
Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563
|| | || || ||| || || | || | | || ||| || | |||||||| ||
Sbjct 1501969 ATACACACTCTCAGAACCAACCCTCACGACCGTCGAATCATTCTGTCTGCATGGAACCCC 1502028
Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGC- 35622
||||| | ||||| |||||||| || |||||| | || ||||||||| |
Sbjct 1502029 GCCGATCTCCCAAAGATGGCGCTTCCTCCCTGTCACATGTTTTGCCAGTTTTATGTGTCG 1502088
Query 35623 TA-----------ATGGAGAA---TTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTC 35668
|| | ||| | ||||||| ||| ||||||||||| | || |
Sbjct 1502089 TACAAAAACTCGGAACGAGGACGTCTGTCGTGTCAGCTGTATCAGCGATCATGTGACCTG 1502148
Query 35669 GGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCC 35725
|| | || || |||||||| ||||| || ||| |||| || || | |||| |||
Sbjct 1502149 GGTCTTGGAGTCCCCTTCAACATTGCCTCCTACGCTCTGCTCACCCGAATGATTGCC 1502205
>seq6
Length=3777980
Score = 96.9 bits (106), Expect = 7e-15
Identities = 140/195 (72%), Gaps = 17/195 (9%)
Strand=Plus/Minus
Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466
||| || | |||||||| | ||||||||| || |||| ||||||| ||| || |||||
Sbjct 3775733 CTCGTACTGCTCGTACAGCTGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCA 3775674
Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC------ACTCTCTCCATGAA 94520
||||| |||||||||||||| ||| | |||| ||| |||| |||||||||
Sbjct 3775673 CTCGTTGGGGCACATCAGGGTCCATT------CAGCGTTCTGCTCGACTCGCTCCATGAA 3775620
Query 94521 GAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAA--TCTTCATTACCG 94578
|| || | | ||| | ||| |||| || | |||| ||| || ||||| || |||
Sbjct 3775619 CAGGTCGGGGATCCACAGAGCCAGGAACAGGT--CTCGGGCTCGAATCTCTTCCTTTCCG 3775562
Query 94579 GCATTCTTTCTGCAG 94593
||||||| ||||
Sbjct 3775561 TGGTTCTTTC-GCAG 3775548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989583632307695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |