Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 181 1e-40 seq6 141 1e-28 seq4 109 7e-19 >seq2 Length=3052417 Score = 181 bits (200), Expect = 1e-40 Identities = 388/574 (68%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||||||||||||||| || | ||||| || || ||||| || ||||| || || Sbjct 506897 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 506956 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 ||||| || ||||| || ||||| ||||| || ||||| |||||||| || || || || Sbjct 506957 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 507016 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCT--GTCATGTATCCACTTTTGAGC 33772 ||||||||||| |||| ||||||| | || | || ||| |||||||| | || Sbjct 507017 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 507076 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832 ||| |||||||| || || | || || || || || ||||| || || || ||| || Sbjct 507077 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 507136 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 || || || || | || || ||||||| || || | || || || ||||| Sbjct 507137 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 507196 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || || ||||| || |||||||| || | ||||||| |||||| || | Sbjct 507197 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 507256 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 ||||| || | | || || || || || || || ||| ||||| || || | || Sbjct 507257 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 507316 Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT---TTATTCCAATCATTGATATCTT 34068 || || || | || || | |||| ||| || | ||| ||| || || | Sbjct 507317 GTGGGAGATGAAGAACCGCTCATC-GTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT 507375 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | | ||| | || || ||||||| || || ||||| ||||| || ||||| | || Sbjct 507376 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 507435 Query 34129 AGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 |||| || || || ||||| ||||| | ||||| Sbjct 507436 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 507469 >seq6 Length=3777980 Score = 141 bits (156), Expect = 1e-28 Identities = 427/657 (65%), Gaps = 2/657 (0%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||||| | ||| || ||| | || ||||| | ||| || || || || ||| Sbjct 3775666 GGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATC 3775607 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || ||||| | || || |||| | || | || || ||||| |||||| || Sbjct 3775606 CACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGC 3775547 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||| |||| | | ||||| ||||| || || | ||| || || | | ||||| Sbjct 3775546 TCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGT 3775487 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| ||||||||||| | ||||| |||||||| ||||| || | || ||| || Sbjct 3775486 CGCTTGTTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGC 3775427 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | |||||||| || | || || || || | || ||| ||| | || || || || Sbjct 3775426 ACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTG 3775367 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 || || ||||| || || || || || || || | || || ||| | || Sbjct 3775366 TGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTA 3775307 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 || |||||||| || ||| || || ||||||| | || ||||| ||||| || Sbjct 3775306 TCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGA 3775247 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA- 63712 | | | |||||| || || | | || || |||||||| || || | || | ||| Sbjct 3775246 GGCTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGAC 3775187 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63772 | ||| ||||| |||||||| || | | || | || || || || | ||| Sbjct 3775186 ATATAG-TTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGAC 3775128 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 ||||| | ||| || || |||| || ||| ||| | | || || ||| | Sbjct 3775127 TCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGC 3775068 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | |||| || || || ||||| |||||||| | |||||||| ||||| | ||| Sbjct 3775067 TCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 3775011 >seq4 Length=3654803 Score = 109 bits (120), Expect = 7e-19 Identities = 463/713 (65%), Gaps = 30/713 (4%) Strand=Plus/Plus Query 63186 CGTTCGAACTCGTCTCCCCAAACATTGTCCA-ATCTAGGACATTCATCCGGACACATCAA 63244 || ||||| || ||||||||||||| | ||| | || || | || | ||||| | | Sbjct 397955 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTCTG-GGACAGAAAAG 398013 Query 63245 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63304 ||||||| | || ||| || ||| |||||| || ||||| | ||| | || Sbjct 398014 AGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGTA 398073 Query 63305 AAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAA 63361 || || || | | || || ||||||| || || ||||| |||| ||||| Sbjct 398074 GAAGAGGTCACGGGCTCGATTTTCCTCGGCACC---ATGGTTTTTGCGCAGATTCAGGAA 398130 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 ||| ||| || | |||||| || ||||| || | || | |||| || |||||||| Sbjct 398131 ATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTT 398190 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | ||| | ||| ||||| || | ||||| | ||| |||| || || Sbjct 398191 TCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCC 398250 Query 63482 GTTTGATATACCATTGGTACCGGAGAT-ATAGCCTCCACTGGCACGAATATTACTAAT-T 63539 | ||| | || | | || | || | || |||| |||| | ||| || || | Sbjct 398251 GGAGGATCTTCCTTGAGACCCAGTAATGAGAG-CTCCCTTGGCTCTAATGTTGTGGATAT 398309 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTGTCATA 63598 | || || || || || || |||| |||||| || || |||||| | |||||| || Sbjct 398310 GCAAG-CCGATACCTCCGGCGGTTTTGGAGATTTGGGCACA-CGTTTTGAGCGTGTCGTA 398367 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 |||||| || ||| || | |||| | || |||||| || | |||| | Sbjct 398368 GATGCCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTG 398427 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TA 63717 | ||||| ||||| || || |||||||| || || || || ||||| || | | Sbjct 398428 GGGGGTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA----TTTTCTGAGCGACA 398483 Query 63718 GA---TTGTACGTCTCAATAGC--TGAGTCTAT-ATC-CCATTGATGAATTCCTACTGCG 63770 || | ||| || || | ||| ||| ||| |||| |||| || | || Sbjct 398484 GAGCCTGGTAGGTTTCGCGCACCTTGAAAATATCATCTCCATGGATG----CCCAGGGCC 398539 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 || ||||| ||||| || ||||||| || || | || | | | |||| ||||| Sbjct 398540 ACTCGCATCAACATATGTTGAGGTCGCTCCACCACGTTTCCGCCAACTCTCAATAAGTAT 398599 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883 || || |||| || || || ||||| ||| ||| | | |||||| | ||| Sbjct 398600 GACTTCTCCAGGGTCTTGAATCCAAAGTAGGAGTAAGTCATGTCTCGGTAGTA 398652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817371691120