Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq2 181 1e-40
seq6 141 1e-28
seq4 109 7e-19
>seq2
Length=3052417
Score = 181 bits (200), Expect = 1e-40
Identities = 388/574 (68%), Gaps = 8/574 (1%)
Strand=Plus/Plus
Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655
||||||||||||||||| || | ||||| || || ||||| || ||||| || ||
Sbjct 506897 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 506956
Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715
||||| || ||||| || ||||| ||||| || ||||| |||||||| || || || ||
Sbjct 506957 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 507016
Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCT--GTCATGTATCCACTTTTGAGC 33772
||||||||||| |||| ||||||| | || | || ||| |||||||| | ||
Sbjct 507017 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 507076
Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832
||| |||||||| || || | || || || || || ||||| || || || ||| ||
Sbjct 507077 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 507136
Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892
|| || || || | || || ||||||| || || | || || || |||||
Sbjct 507137 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 507196
Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952
|| || ||||| || |||||||| || | ||||||| |||||| || |
Sbjct 507197 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 507256
Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012
||||| || | | || || || || || || || ||| ||||| || || | ||
Sbjct 507257 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 507316
Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT---TTATTCCAATCATTGATATCTT 34068
|| || || | || || | |||| ||| || | ||| ||| || || |
Sbjct 507317 GTGGGAGATGAAGAACCGCTCATC-GTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT 507375
Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128
| | ||| | || || ||||||| || || ||||| ||||| || ||||| | ||
Sbjct 507376 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 507435
Query 34129 AGATGTCATGATATTGGATTGGGAAAATAACAAA 34162
|||| || || || ||||| ||||| | |||||
Sbjct 507436 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 507469
>seq6
Length=3777980
Score = 141 bits (156), Expect = 1e-28
Identities = 427/657 (65%), Gaps = 2/657 (0%)
Strand=Plus/Minus
Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293
|| ||||||| | ||| || ||| | || ||||| | ||| || || || || |||
Sbjct 3775666 GGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATC 3775607
Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353
|| ||||| | || || |||| | || | || || ||||| |||||| ||
Sbjct 3775606 CACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGC 3775547
Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413
||| |||| | | ||||| ||||| || || | ||| || || | | |||||
Sbjct 3775546 TCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGT 3775487
Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473
|| ||||| ||||||||||| | ||||| |||||||| ||||| || | || ||| ||
Sbjct 3775486 CGCTTGTTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGC 3775427
Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533
| |||||||| || | || || || || | || ||| ||| | || || || ||
Sbjct 3775426 ACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTG 3775367
Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593
|| || ||||| || || || || || || || | || || ||| | ||
Sbjct 3775366 TGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTA 3775307
Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653
|| |||||||| || ||| || || ||||||| | || ||||| ||||| ||
Sbjct 3775306 TCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGA 3775247
Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA- 63712
| | | |||||| || || | | || || |||||||| || || | || | |||
Sbjct 3775246 GGCTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGAC 3775187
Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63772
| ||| ||||| |||||||| || | | || | || || || || | |||
Sbjct 3775186 ATATAG-TTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGAC 3775128
Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832
||||| | ||| || || |||| || ||| ||| | | || || ||| |
Sbjct 3775127 TCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGC 3775068
Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
| |||| || || || ||||| |||||||| | |||||||| ||||| | |||
Sbjct 3775067 TCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 3775011
>seq4
Length=3654803
Score = 109 bits (120), Expect = 7e-19
Identities = 463/713 (65%), Gaps = 30/713 (4%)
Strand=Plus/Plus
Query 63186 CGTTCGAACTCGTCTCCCCAAACATTGTCCA-ATCTAGGACATTCATCCGGACACATCAA 63244
|| ||||| || ||||||||||||| | ||| | || || | || | ||||| | |
Sbjct 397955 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTCTG-GGACAGAAAAG 398013
Query 63245 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63304
||||||| | || ||| || ||| |||||| || ||||| | ||| | ||
Sbjct 398014 AGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGTA 398073
Query 63305 AAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAA 63361
|| || || | | || || ||||||| || || ||||| |||| |||||
Sbjct 398074 GAAGAGGTCACGGGCTCGATTTTCCTCGGCACC---ATGGTTTTTGCGCAGATTCAGGAA 398130
Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421
||| ||| || | |||||| || ||||| || | || | |||| || ||||||||
Sbjct 398131 ATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTT 398190
Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481
|||||| || || | ||| | ||| ||||| || | ||||| | ||| |||| || ||
Sbjct 398191 TCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCC 398250
Query 63482 GTTTGATATACCATTGGTACCGGAGAT-ATAGCCTCCACTGGCACGAATATTACTAAT-T 63539
| ||| | || | | || | || | || |||| |||| | ||| || || |
Sbjct 398251 GGAGGATCTTCCTTGAGACCCAGTAATGAGAG-CTCCCTTGGCTCTAATGTTGTGGATAT 398309
Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTGTCATA 63598
| || || || || || || |||| |||||| || || |||||| | |||||| ||
Sbjct 398310 GCAAG-CCGATACCTCCGGCGGTTTTGGAGATTTGGGCACA-CGTTTTGAGCGTGTCGTA 398367
Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658
|||||| || ||| || | |||| | || |||||| || | |||| |
Sbjct 398368 GATGCCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTG 398427
Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TA 63717
| ||||| ||||| || || |||||||| || || || || ||||| || | |
Sbjct 398428 GGGGGTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA----TTTTCTGAGCGACA 398483
Query 63718 GA---TTGTACGTCTCAATAGC--TGAGTCTAT-ATC-CCATTGATGAATTCCTACTGCG 63770
|| | ||| || || | ||| ||| ||| |||| |||| || | ||
Sbjct 398484 GAGCCTGGTAGGTTTCGCGCACCTTGAAAATATCATCTCCATGGATG----CCCAGGGCC 398539
Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830
|| ||||| ||||| || ||||||| || || | || | | | |||| |||||
Sbjct 398540 ACTCGCATCAACATATGTTGAGGTCGCTCCACCACGTTTCCGCCAACTCTCAATAAGTAT 398599
Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883
|| || |||| || || || ||||| ||| ||| | | |||||| | |||
Sbjct 398600 GACTTCTCCAGGGTCTTGAATCCAAAGTAGGAGTAAGTCATGTCTCGGTAGTA 398652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817371691120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |