Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq2 190 3e-43
seq6 158 2e-33
seq4 93.3 6e-14
>seq2
Length=3052417
Score = 190 bits (210), Expect = 3e-43
Identities = 390/574 (68%), Gaps = 8/574 (1%)
Strand=Plus/Plus
Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033
||||||||||||||||| || || |||||||| || ||||| || ||||| || ||
Sbjct 506897 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 506956
Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093
||||| || ||||| || ||||| || || || || || |||||||| || || || ||
Sbjct 506957 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 507016
Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCT--GTCATGTATCCACTTTTGAGC 50150
||||||||||| |||| ||||||| | ||| | || ||| |||||||| | ||
Sbjct 507017 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 507076
Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 50210
||| |||||||| || || | || || || || || ||||| || || || ||| ||
Sbjct 507077 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 507136
Query 50211 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270
|| || || || | || || ||||||| || || | || || || |||||
Sbjct 507137 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 507196
Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 50330
|| || ||||| || |||||||| || | ||||||| |||||| || |
Sbjct 507197 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 507256
Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390
||||| ||| | | || || || || || ||||| ||| ||||| || || | ||
Sbjct 507257 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 507316
Query 50391 ATG---TTTTATAAAATGTTTTTCGTTG-GGTGTTAGTTTATTCCAATCATTGATATCTT 50446
|| | | || | | |||||| | || | || | ||| ||| || || |
Sbjct 507317 GTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTG-TTCTCCCAGTCACCCATGTCCT 507375
Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506
| | ||| | || || ||||||| || || ||||| ||||| || ||||| | ||
Sbjct 507376 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 507435
Query 50507 AGATGTCATGATATTGGATTGGGAAAATAACAAA 50540
|||| || || || ||||| ||||| | |||||
Sbjct 507436 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 507469
>seq6
Length=3777980
Score = 158 bits (174), Expect = 2e-33
Identities = 364/546 (67%), Gaps = 2/546 (0%)
Strand=Plus/Minus
Query 79864 AACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCAC 79923
||||| || || | || ||||| | || || || |||| || ||||||| | |||
Sbjct 3775708 AACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCAT 3775649
Query 79924 TCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 79983
|| | | | || ||||| | ||| || || || || ||||| ||||| | || ||
Sbjct 3775648 TCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAGG 3775589
Query 79984 TCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 80043
|||| || || | ||| || ||||| |||||| || ||| |||| | | |||
Sbjct 3775588 TCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATA 3775529
Query 80044 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGA 80103
|| ||||| || || | ||| || || | | || ||||| ||||| |||||||||
Sbjct 3775528 TCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTGA 3775469
Query 80104 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 80163
|| | ||||| |||||||| ||||| || | || ||| || | ||||| ||||| ||
Sbjct 3775468 TCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGTT 3775409
Query 80164 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATT 80223
|| || || || | || ||| ||| | || || || || || || ||||| ||
Sbjct 3775408 CCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGATA 3775349
Query 80224 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATG 80283
|| || || || || || | || || ||| | ||||| |||||||| || |||
Sbjct 3775348 CCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGATG 3775289
Query 80284 CTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 80343
|| || ||||||| | || ||||| ||||| || | | |||||| ||
Sbjct 3775288 GAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGCG 3775229
Query 80344 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTC 80402
|| | | || || |||||||| || || | || | ||||| ||| ||||| |||||
Sbjct 3775228 TTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAG-TTGTAGGTCTC 3775170
Query 80403 AATAGC 80408
||| ||
Sbjct 3775169 AATGGC 3775164
>seq4
Length=3654803
Score = 93.3 bits (102), Expect = 6e-14
Identities = 341/522 (65%), Gaps = 14/522 (3%)
Strand=Plus/Plus
Query 79858 CGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA-CATTCGTCAGGACACATCAA 79916
|| ||||| || ||||||||||||||| | | || || | || | ||||| | |
Sbjct 397955 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTCTG-GGACAGAAAAG 398013
Query 79917 CGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976
||||||| | | ||| || ||| |||||| || ||||| | ||| | ||
Sbjct 398014 AGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGTA 398073
Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAA 80033
|| || || | || || || |||||| || || ||||| |||| |||||
Sbjct 398074 GAAGAGGTCACGGGCTCGATTTTCCTCGGCACC---ATGGTTTTTGCGCAGATTCAGGAA 398130
Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093
||| ||| || | |||||| || ||||| || | || | |||| || ||||||||
Sbjct 398131 ATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTT 398190
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| || || | ||| | ||| ||||| || | ||||| | ||| |||| || ||
Sbjct 398191 TCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCC 398250
Query 80154 ATTGGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAAT-T 80211
|||| | || | | ||| | || | ||| ||| |||| | ||| || || |
Sbjct 398251 GGAGGATCTTCCTTGAGACCCAGTAATGAGAGC-TCCCTTGGCTCTAATGTTGTGGATAT 398309
Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATA 80270
| || || || || || || |||| |||||| || || |||||| | ||| || ||
Sbjct 398310 GCAAG-CCGATACCTCCGGCGGTTTTGGAGATTTGGGCACA-CGTTTTGAGCGTGTCGTA 398367
Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330
|||||| || ||| || | |||| | || |||||| || | |||| |
Sbjct 398368 GATGCCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTG 398427
Query 80331 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372
||||| ||||| || || |||||||| || || || ||
Sbjct 398428 GGGGGTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA 398469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268539627560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |