Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 172 7e-38 seq6 140 4e-28 >seq2 Length=3052417 Score = 172 bits (190), Expect = 7e-38 Identities = 385/574 (67%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 |||||||||||| |||| || | |||||||| || ||||| || ||||| || || Sbjct 506897 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 506956 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 ||||| || ||||| || || || || || || || || |||||||| || || || || Sbjct 506957 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 507016 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACT--GTCATGTATCCACTTTTGAGC 42255 ||||||||||| |||| ||||||| | || | || ||| |||||||| | || Sbjct 507017 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 507076 Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315 ||| |||||||| || || | || || || || || ||||| || || || ||| || Sbjct 507077 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 507136 Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 || || || || | ||||| ||||||| || || | || || || ||||| Sbjct 507137 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 507196 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435 || || ||||| || |||||||| || ||||||||| |||| || || | Sbjct 507197 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 507256 Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495 ||||| ||| | | || ||||| || || ||||| ||| ||||| || || | || Sbjct 507257 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 507316 Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCAATCATTGATATCTT 42551 || || || | || | || |||| | || | ||| ||| || || | Sbjct 507317 GTGGGAGATGAAGAACCGCTCAT-CGTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT 507375 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 | | ||| | || || | ||||| || || || || ||||| || ||||| | || Sbjct 507376 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 507435 Query 42612 AGATATCATGATATTGAATTGGGAAAATAACAAA 42645 |||| || || || || || ||||| | ||||| Sbjct 507436 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 507469 >seq6 Length=3777980 Score = 140 bits (154), Expect = 4e-28 Identities = 344/519 (66%), Gaps = 2/519 (0%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||||| | ||| || | | | | ||||| | ||| Sbjct 3775681 CCGGGGCACTCGTTGGGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATG 3775622 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || || || || ||||| ||||| | || || |||| || || | ||| || ||||| Sbjct 3775621 AACAGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCG 3775562 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 |||||| || ||| |||| | | ||||| ||||| || || | ||| || Sbjct 3775561 TGGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATT 3775502 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| ||||||||||| | ||||| |||||||| ||||| Sbjct 3775501 GCAAAGGCACCAGGTCGCTTGTTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAG 3775442 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | || ||| || | ||||| ||||| | || || || || | || ||| ||| Sbjct 3775441 ACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCA 3775382 Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 | || || || ||| || || ||||| || || || || || || || | || Sbjct 3775381 GTAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCA 3775322 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 || ||| | ||||| |||||||| || || || ||| ||||||| | || ||| Sbjct 3775321 CAGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAA 3775262 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 || ||||| || | | |||||| || || | | || || |||||||| || Sbjct 3775261 CACGACGACATCTGAGGCTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTG 3775202 Query 72454 AACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGC 72491 || | || | ||||| ||| ||||| |||||||| || Sbjct 3775201 AAGTACTTCTGAGACATATAG-TTGTAGGTCTCAATGGC 3775164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138956712040