Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2 259 7e-64
seq6 98.7 1e-15
>seq2
Length=3052417
Score = 259 bits (286), Expect = 7e-64
Identities = 593/880 (67%), Gaps = 47/880 (5%)
Strand=Plus/Minus
Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054
|| || |||||| ||| || || || ||| | |||||||| ||||| ||||||| ||
Sbjct 507463 CTCTTCCCCATCCAGTACCACGAAATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTC 507404
Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114
||||| | || ||| | ||||| |||||| || || ||||||| | |||
Sbjct 507403 TGGACAGCTGAGGAGATTGATCTTGGAAAGGACATGGGTGACTGGGAGAACAG----ACT 507348
Query 125115 GAA--AC--TGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170
|| || |||||| || || || ||| || | || |||||||| | |||||| ||
Sbjct 507347 CAACAACGATGAGCGGTTCTTCATCTCCCACGTTCTCGCATTCTTTGCTGCCTCCGACGG 507288
Query 125171 AATCGTCAACGACAATCTG-TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGT 125229
||||| ||||| || ||| |||| |||||||| ||| || || ||||
Sbjct 507287 TATCGTTAACGAGAACCTGGTTGAG-CGATTCTCCGGCGAGGTGCAGGCCCCCGAGGCCA 507229
Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289
|||||| ||||| ||||| |||||||| |||||| | ||||| || | ||||| |
Sbjct 507228 AGTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTGC 507169
Query 125290 TGATTGACATGTACATTCGCGATCCGCAAC-GTAAACACATGCTCTTTAACGCAATCGAC 125348
|||| |||| ||||| || || || | ||| | || || ||||| |||||
Sbjct 507168 TGATCGACACATACATCAAGGACCCCAAAGAGCGAACCTAC-CTGTTCAACGCCATCGAG 507110
Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408
|| | || | || |||||||| | |||| | ||||||| ||||| ||
Sbjct 507109 ACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAG 507050
Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468
|| | | | || |||| | || || |||||||| |||||||||||||| || ||
Sbjct 507049 TCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 506990
Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528
||| || ||||||| |||||||||||||| || |||||||| || || || |
Sbjct 506989 TCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTCACCTTCTCC 506930
Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCG 125587
|||||| | || || ||||||||||| || ||| |||||||||| || || || |||
Sbjct 506929 AACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCG 506870
Query 125588 CAACT--ATCTGCGTCCC-GAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644
|| || | || ||| | | |||| | ||| | || ||||||
Sbjct 506869 CACCTTGAGAACCGACCCTCAAAGAAGAT----TGTTGAGGACGT------CATTGT--- 506823
Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC----GGTCAGCATGA 125700
||| || || | || || || ||||| || || || | || || |||| ||
Sbjct 506822 CGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTC----TGC 506767
Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760
|||| |||||| |||||| |||||| ||||||| |||||||| || || ||||| ||
Sbjct 506766 TTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCT-- 506709
Query 125761 ACGAGTTGAT-----TGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGAC 125815
||||| | | | |||| | || ||| ||| || ||||| || ||||||
Sbjct 506708 ---AGTTGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGA 506652
Query 125816 CAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
| ||| || || | || |||||||||||||||||||||
Sbjct 506651 GAACATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAG 506612
>seq6
Length=3777980
Score = 98.7 bits (108), Expect = 1e-15
Identities = 340/521 (65%), Gaps = 12/521 (2%)
Strand=Plus/Plus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
||||||||| ||||| ||||| || || || || || | || | ||| | || ||
Sbjct 3775458 CGATACGTTGATCAGGGAGGCAACAAGCGACCTGGTGCCTTTGCAATGTACCTTGAGCCC 3775517
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
||||||| || | || || || |||| |||| || ||| || ||||||
Sbjct 3775518 TGGCACGACGATATCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGAAAGGAAGAGATT 3775577
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|||||| | ||| |||| || || ||| | || || |||||||| |||| ||| |
Sbjct 3775578 CGAGCCCGAGACCTGTTCCTGGCTCTGTGGATCCCCGACCTGTTCATGGAGCGAGTCGAG 3775637
Query 97044 GACGGTGGCT-ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102
| | ||| | |||| ||| ||||||||| || || |||||||| ||| ||
Sbjct 3775638 CA-GAACGCTGAATGGACCCTGATGTGCCCCAACGAGTGCCCCGGTCTTGACGACGTCTA 3775696
Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG 97162
|| || |||||| || |||| | |||||| | ||||||||| | ||||
Sbjct 3775697 TGGTGATGAGTTTAAGCAGCTGTACGAGCAGTACGAGAAGGAGGGCCGAGGCC---GACG 3775753
Query 97163 AG---TCGATGCACGAGAA-CTGTGGAAGGCCATCGT-GACGGCTCAGGTAGAGACTGGA 97217
| || ||| | |||| |||||| | ||| | ||| || ||| ||| | ||
Sbjct 3775754 AACCATCCCTGCCC-AGAAGCTGTGGTACCACATTCTCGACTGC-CAGACCGAGTCCGGC 3775811
Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277
| || | ||| || |||||||| || || || || |||||| || | ||
Sbjct 3775812 AACCCCTTCATGCTGTACAAGGACTCCTGCAACCGAAAGTCCAACCAGAAGAACCTCGGA 3775871
Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337
|| || ||| || || |||||| || |||||||||||| | ||||| || |||
Sbjct 3775872 ACAATTAAGTCTTCTAACCTGTGCTGTGAGATTGTAGAGTACTCTTCTCCTGATGAGGTC 3775931
Query 97338 GCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378
|| || ||| ||||| || || |||||||| |||||
Sbjct 3775932 GCTGTCTGCAACCTGGCTTCCATCGCTCTGCCCACTTTTGT 3775972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058931366040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |