Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 259 7e-64 seq6 98.7 1e-15 >seq2 Length=3052417 Score = 259 bits (286), Expect = 7e-64 Identities = 593/880 (67%), Gaps = 47/880 (5%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| ||| || || || ||| | |||||||| ||||| ||||||| || Sbjct 507463 CTCTTCCCCATCCAGTACCACGAAATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTC 507404 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | || ||| | ||||| |||||| || || ||||||| | ||| Sbjct 507403 TGGACAGCTGAGGAGATTGATCTTGGAAAGGACATGGGTGACTGGGAGAACAG----ACT 507348 Query 125115 GAA--AC--TGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 || || |||||| || || || ||| || | || |||||||| | |||||| || Sbjct 507347 CAACAACGATGAGCGGTTCTTCATCTCCCACGTTCTCGCATTCTTTGCTGCCTCCGACGG 507288 Query 125171 AATCGTCAACGACAATCTG-TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGT 125229 ||||| ||||| || ||| |||| |||||||| ||| || || |||| Sbjct 507287 TATCGTTAACGAGAACCTGGTTGAG-CGATTCTCCGGCGAGGTGCAGGCCCCCGAGGCCA 507229 Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 |||||| ||||| ||||| |||||||| |||||| | ||||| || | ||||| | Sbjct 507228 AGTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTGC 507169 Query 125290 TGATTGACATGTACATTCGCGATCCGCAAC-GTAAACACATGCTCTTTAACGCAATCGAC 125348 |||| |||| ||||| || || || | ||| | || || ||||| ||||| Sbjct 507168 TGATCGACACATACATCAAGGACCCCAAAGAGCGAACCTAC-CTGTTCAACGCCATCGAG 507110 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || | || | || |||||||| | |||| | ||||||| ||||| || Sbjct 507109 ACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAG 507050 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 || | | | || |||| | || || |||||||| |||||||||||||| || || Sbjct 507049 TCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 506990 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||| || ||||||| |||||||||||||| || |||||||| || || || | Sbjct 506989 TCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTCACCTTCTCC 506930 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCG 125587 |||||| | || || ||||||||||| || ||| |||||||||| || || || ||| Sbjct 506929 AACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCG 506870 Query 125588 CAACT--ATCTGCGTCCC-GAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 || || | || ||| | | |||| | ||| | || |||||| Sbjct 506869 CACCTTGAGAACCGACCCTCAAAGAAGAT----TGTTGAGGACGT------CATTGT--- 506823 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC----GGTCAGCATGA 125700 ||| || || | || || || ||||| || || || | || || |||| || Sbjct 506822 CGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTC----TGC 506767 Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 |||| |||||| |||||| |||||| ||||||| |||||||| || || ||||| || Sbjct 506766 TTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCT-- 506709 Query 125761 ACGAGTTGAT-----TGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGAC 125815 ||||| | | | |||| | || ||| ||| || ||||| || |||||| Sbjct 506708 ---AGTTGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGA 506652 Query 125816 CAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | ||| || || | || ||||||||||||||||||||| Sbjct 506651 GAACATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAG 506612 >seq6 Length=3777980 Score = 98.7 bits (108), Expect = 1e-15 Identities = 340/521 (65%), Gaps = 12/521 (2%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 ||||||||| ||||| ||||| || || || || || | || | ||| | || || Sbjct 3775458 CGATACGTTGATCAGGGAGGCAACAAGCGACCTGGTGCCTTTGCAATGTACCTTGAGCCC 3775517 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 ||||||| || | || || || |||| |||| || ||| || |||||| Sbjct 3775518 TGGCACGACGATATCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGAAAGGAAGAGATT 3775577 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 |||||| | ||| |||| || || ||| | || || |||||||| |||| ||| | Sbjct 3775578 CGAGCCCGAGACCTGTTCCTGGCTCTGTGGATCCCCGACCTGTTCATGGAGCGAGTCGAG 3775637 Query 97044 GACGGTGGCT-ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 | | ||| | |||| ||| ||||||||| || || |||||||| ||| || Sbjct 3775638 CA-GAACGCTGAATGGACCCTGATGTGCCCCAACGAGTGCCCCGGTCTTGACGACGTCTA 3775696 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG 97162 || || |||||| || |||| | |||||| | ||||||||| | |||| Sbjct 3775697 TGGTGATGAGTTTAAGCAGCTGTACGAGCAGTACGAGAAGGAGGGCCGAGGCC---GACG 3775753 Query 97163 AG---TCGATGCACGAGAA-CTGTGGAAGGCCATCGT-GACGGCTCAGGTAGAGACTGGA 97217 | || ||| | |||| |||||| | ||| | ||| || ||| ||| | || Sbjct 3775754 AACCATCCCTGCCC-AGAAGCTGTGGTACCACATTCTCGACTGC-CAGACCGAGTCCGGC 3775811 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 | || | ||| || |||||||| || || || || |||||| || | || Sbjct 3775812 AACCCCTTCATGCTGTACAAGGACTCCTGCAACCGAAAGTCCAACCAGAAGAACCTCGGA 3775871 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337 || || ||| || || |||||| || |||||||||||| | ||||| || ||| Sbjct 3775872 ACAATTAAGTCTTCTAACCTGTGCTGTGAGATTGTAGAGTACTCTTCTCCTGATGAGGTC 3775931 Query 97338 GCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 || || ||| ||||| || || |||||||| ||||| Sbjct 3775932 GCTGTCTGCAACCTGGCTTCCATCGCTCTGCCCACTTTTGT 3775972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058931366040