Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 140 5e-29 seq3 132 8e-27 >seq6 Length=3777980 Score = 140 bits (154), Expect = 5e-29 Identities = 194/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | ||| | | |||||||||||||| || ||||| ||||| |||| Sbjct 3175056 CGCTAAGCGACACCGAAAGATTT-TGCGAGATAACATCCAGGGTATCACTAAGCCCGCTA 3174998 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || || ||||| |||||||| | || | | | || || |||| Sbjct 3174997 TCCGACGTCTTGCACGACGAGGTGGTGTCAAGCGAATTTCCGCCCAGATTTACGAGGAGA 3174938 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| ||||||| || | || || | ||||| || || || | Sbjct 3174937 CCCGAAACGTTCTGAAGTCCTTCCTCGAGTCTGTCATTCGAGATGCCGTCACTTACACTG 3174878 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||| || | ||| | ||||| || | || || || | Sbjct 3174877 AGCACGCCAAGCGAAAGACTGTCACTTCTCTTGATGTTGTCTACGCCCTCAAGCGACAGG 3174818 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | |||| ||||| || ||||| Sbjct 3174817 GCCGAACCCTTTACGGTTTCGGTGGTTAA 3174789 >seq3 Length=3339761 Score = 132 bits (146), Expect = 8e-27 Identities = 193/270 (71%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | ||| ||||||||||||||| || || ||||| ||||| || | Sbjct 1566814 CGCTAAGCGACACCGAAAGAT-TCTTCGAGATAACATTCAGGGTATCACTAAGCCCGCCA 1566872 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || || ||||| || ||||| | || | | |||| || |||| Sbjct 1566873 TCCGACGTCTTGCGCGACGAGGTGGTGTGAAGCGAATTTCCGCCCAGATCTACGAGGAGA 1566932 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| ||||| || | ||||| | || || || ||| || | Sbjct 1566933 CCCGAAACGTTCTCAAGTCTTTCCTTGAGTCTGTTATTCGAGACGCCGTCACCTACACTG 1566992 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||| || | ||| | ||||| || | || || || | Sbjct 1566993 AGCACGCCAAGCGAAAGACTGTCACTTCTCTTGATGTTGTCTACGCTCTCAAGCGACAGG 1567052 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | |||| ||||| || |||||| Sbjct 1567053 GCCGAACCCTTTACGGTTTCGGTGGTTAAT 1567082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075173485097