Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq2 187 3e-42
seq6 136 5e-27
seq4 100 4e-16
>seq2
Length=3052417
Score = 187 bits (206), Expect = 3e-42
Identities = 389/574 (68%), Gaps = 8/574 (1%)
Strand=Plus/Plus
Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377
||||||||||||||||| || || |||||||| || ||||| || ||||| || ||
Sbjct 506897 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 506956
Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437
||||| || ||||| || ||||| ||||| || || || |||||||| || || || ||
Sbjct 506957 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 507016
Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCT--GTCATGTATCCACTTTTGAGC 33494
||||||||||| |||| ||||||| | || | || ||| |||||||| | ||
Sbjct 507017 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 507076
Query 33495 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33554
||| |||||||| || || | || || || || || ||||| || || || ||| ||
Sbjct 507077 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 507136
Query 33555 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614
|| || || || | || || ||||||| || || | || || || |||||
Sbjct 507137 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 507196
Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674
|| || ||||| || |||||||| || | ||||||| ||| || || |
Sbjct 507197 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 507256
Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734
||||| || ||| || || || || || ||||| ||| ||||| || || | ||
Sbjct 507257 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 507316
Query 33735 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT---TTATTCCAATCATTGATATCTT 33790
|| || || | || || | |||| ||| || | ||| ||| || || |
Sbjct 507317 GTGGGAGATGAAGAACCGCTCATC-GTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT 507375
Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850
| | ||| | || || ||||||| || || ||||| ||||| || ||||| | ||
Sbjct 507376 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 507435
Query 33851 AGATGTCATAATATTGGATTGGGAAAATAACAAA 33884
|||| || | || ||||| ||||| | |||||
Sbjct 507436 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 507469
>seq6
Length=3777980
Score = 136 bits (150), Expect = 5e-27
Identities = 451/699 (65%), Gaps = 2/699 (0%)
Strand=Plus/Minus
Query 63141 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 63200
||||| || || | || | ||| | || || || || | || ||||||| | |||
Sbjct 3775708 AACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCAT 3775649
Query 63201 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 63260
|| ||| | || ||||| | ||| || || || || ||||| ||||| | || ||
Sbjct 3775648 TCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAGG 3775589
Query 63261 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 63320
|||| || || | || || ||||| |||||| || ||| |||| | | |||
Sbjct 3775588 TCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATA 3775529
Query 63321 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 63380
|| ||||| || || | ||| || || | | ||||| || ||||| |||||||||
Sbjct 3775528 TCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTGA 3775469
Query 63381 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATA 63440
|| | ||||| |||||||| ||||| || | || ||| || | |||||||| || |
Sbjct 3775468 TCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGTT 3775409
Query 63441 CCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATT 63500
|| || || || | || ||| ||| | || || || || || || ||||| ||
Sbjct 3775408 CCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGATA 3775349
Query 63501 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATG 63560
|| || || || || || | || || ||| | || || ||||| || || |||
Sbjct 3775348 CCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGATG 3775289
Query 63561 CTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63620
|| || ||||||| | || ||||| ||||| || | | |||||| ||
Sbjct 3775288 GAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGCG 3775229
Query 63621 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTC 63679
|| | | || || |||||||| || || | || | ||| | ||| ||||| |||||
Sbjct 3775228 TTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAG-TTGTAGGTCTC 3775170
Query 63680 AATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 63739
||| || | | || | || || || || | ||| ||||| | ||| || ||
Sbjct 3775169 AATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATCTGTTG 3775110
Query 63740 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 63799
|||| || | | ||| | | || || ||| | | |||| || || ||
Sbjct 3775109 GGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGGGTCTTGAA 3775050
Query 63800 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838
||||| |||||||| | |||||||| ||||| | |||
Sbjct 3775049 GCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 3775011
>seq4
Length=3654803
Score = 100 bits (110), Expect = 4e-16
Identities = 461/713 (65%), Gaps = 30/713 (4%)
Strand=Plus/Plus
Query 63135 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAA 63193
|| ||||| || ||||||||||||| | ||| || || | || | ||||| | |
Sbjct 397955 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTCTG-GGACAGAAAAG 398013
Query 63194 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63253
||||||| | || ||| || ||| |||||| || ||||| | ||| | ||
Sbjct 398014 AGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGTA 398073
Query 63254 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAA 63310
|| || || | || || || ||||||| || || ||||| |||| |||||
Sbjct 398074 GAAGAGGTCACGGGCTCGATTTTCCTCGGCACC---ATGGTTTTTGCGCAGATTCAGGAA 398130
Query 63311 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63370
||| ||| || | |||||| || ||||| || | || | |||| || ||||||||
Sbjct 398131 ATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTT 398190
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| || || | ||| | ||| ||||| || | ||||| | ||| |||| || ||
Sbjct 398191 TCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCC 398250
Query 63431 GTTTGATATACCATTGGTACCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAAT-T 63488
| ||| | || | | || | || | ||| ||| |||| | ||| || || |
Sbjct 398251 GGAGGATCTTCCTTGAGACCCAGTAATGAGAGC-TCCCTTGGCTCTAATGTTGTGGATAT 398309
Query 63489 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTGTCATA 63547
| || || || || || || |||| |||||| || || |||||| | |||||| ||
Sbjct 398310 GCAAG-CCGATACCTCCGGCGGTTTTGGAGATTTGGGCACA-CGTTTTGAGCGTGTCGTA 398367
Query 63548 GATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607
||| || || ||| || | |||| | || |||||| || | |||| |
Sbjct 398368 GATGCCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTG 398427
Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TA 63666
||||| ||||| || || |||||||| || || || || ||||| || | |
Sbjct 398428 GGGGGTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA----TTTTCTGAGCGACA 398483
Query 63667 GA---TTGTACGTCTCAATAGC--TGAGTCTAT-ATC-CCATTGATGAATTCCTACTGCG 63719
|| | ||| || || | ||| ||| ||| |||| |||| || | ||
Sbjct 398484 GAGCCTGGTAGGTTTCGCGCACCTTGAAAATATCATCTCCATGGATG----CCCAGGGCC 398539
Query 63720 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63779
|| ||||| ||||| || ||||||| || || | || | | | |||| |||||
Sbjct 398540 ACTCGCATCAACATATGTTGAGGTCGCTCCACCACGTTTCCGCCAACTCTCAATAAGTAT 398599
Query 63780 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832
|| || |||| || || || ||||| ||| ||| | | |||||| | |||
Sbjct 398600 GACTTCTCCAGGGTCTTGAATCCAAAGTAGGAGTAAGTCATGTCTCGGTAGTA 398652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946974181640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |