Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 3e-29
seq6 122 8e-23
seq5 91.5 1e-13
>seq2
Length=3052417
Score = 143 bits (158), Expect = 3e-29
Identities = 342/503 (68%), Gaps = 28/503 (6%)
Strand=Plus/Minus
Query 46098 CAAGAAAA---CCGACTGGGCGATGAAGTGGATCAACAGCAGCACCG-CGACTTTCGCCG 46153
|||||||| |||||||||| | ||||||||| | | | | | | || || | |
Sbjct 507095 CAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGAC-GAAGAGTCCACCTTTGGAG 507037
Query 46154 AGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCA 46213
|||| | | |||||||| || |||||| |||| || || ||| ||| ||| |||
Sbjct 507036 AGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCA 506977
Query 46214 TCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATA 46272
|||| | |||| || | ||| | ||||||| ||||| || || ||||||||| ||
Sbjct 506976 TCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACCTTCTCCAACGAGCTCATC 506918
Query 46273 TCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCAC 46332
|| || |||||||| ||||| || |||||||| || || || | ||||| |
Sbjct 506917 TCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTG--CTTTT---CTCGCAC-CTT 506864
Query 46333 GACAAGCTTGCGCCCGACACCG-----TGCTGAGCATGTTCAAG--GAGGCGGTGGCCAT 46385
|| || | | || || | || |||| | || | ||||| || | |||
Sbjct 506863 GAGAACC----GACCCTCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTGGCAT 506808
Query 46386 TGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTC 46445
||| ||||||| |||| | ||| |||||| || ||||| || |||||||| ||
Sbjct 506807 CGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCAAGCT 506748
Query 46446 AATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACCAGC-CG 46503
|||||| | |||||||||||||| || ||||| ||||| || ||| || | | |
Sbjct 506747 GATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAGT--TGCTCTCGGTAACTCC 506690
Query 46504 AAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAA 46563
||| | | || | ||| || || || || ||| | |||||||| |||| |||||
Sbjct 506689 AAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCAAG 506630
Query 46564 ACTAATTTTTTCGAAAAGCGCGT 46586
|| || |||||||| ||||| ||
Sbjct 506629 ACCAACTTTTTCGAGAAGCGAGT 506607
>seq6
Length=3777980
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||||| || | ||| | || |||||||| || |||||||| ||
Sbjct 1363901 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1363842
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| |||||||| || ||| |||| | |||||||||||||| ||
Sbjct 1363841 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1363782
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
||||| || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 1363781 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1363722
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | || |||||||| || || || || |||||||||||
Sbjct 1363721 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1363675
Score = 102 bits (112), Expect = 8e-17
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079
||||| || | ||| | || |||||||| || |||||||| ||| | || || |
Sbjct 1245198 CGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCG 1245139
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
||||| |||||||| || ||| |||| | |||||||||||||| |||||||| || |||
Sbjct 1245138 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTG 1245079
Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199
|| ||| || ||||| | || | || || | |||||| | |||| ||| |
Sbjct 1245078 TCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATA 1245019
Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA 131233
|| || || || || || || || || || ||||
Sbjct 1245018 GTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1244985
>seq5
Length=4047401
Score = 91.5 bits (100), Expect = 1e-13
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || | ||| | || |||||||| ||||||||||| || |
Sbjct 2184061 CCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAC 2184002
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||||| |||||||| || ||| | || | |||||||||||||||||
Sbjct 2184001 AGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGA 2183942
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
||||| || ||||| || || ||||| | || | || |||| ||||||||
Sbjct 2183941 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGA 2183884
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
||||| |||||||| || || | || | |||||||||||||| || ||||| || |||
Sbjct 2184217 TCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 2184158
Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199
|| || || ||||| | || | ||| || | ||||| | |||| || | |
Sbjct 2184157 TCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTGATG 2184098
Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| || || || ||||| || ||||||||||||||
Sbjct 2184097 GTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012628895360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |