Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 seq6 122 8e-23 seq5 91.5 1e-13 >seq2 Length=3052417 Score = 143 bits (158), Expect = 3e-29 Identities = 342/503 (68%), Gaps = 28/503 (6%) Strand=Plus/Minus Query 46098 CAAGAAAA---CCGACTGGGCGATGAAGTGGATCAACAGCAGCACCG-CGACTTTCGCCG 46153 |||||||| |||||||||| | ||||||||| | | | | | | || || | | Sbjct 507095 CAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGAC-GAAGAGTCCACCTTTGGAG 507037 Query 46154 AGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCA 46213 |||| | | |||||||| || |||||| |||| || || ||| ||| ||| ||| Sbjct 507036 AGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCA 506977 Query 46214 TCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATA 46272 |||| | |||| || | ||| | ||||||| ||||| || || ||||||||| || Sbjct 506976 TCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACCTTCTCCAACGAGCTCATC 506918 Query 46273 TCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCAC 46332 || || |||||||| ||||| || |||||||| || || || | ||||| | Sbjct 506917 TCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTG--CTTTT---CTCGCAC-CTT 506864 Query 46333 GACAAGCTTGCGCCCGACACCG-----TGCTGAGCATGTTCAAG--GAGGCGGTGGCCAT 46385 || || | | || || | || |||| | || | ||||| || | ||| Sbjct 506863 GAGAACC----GACCCTCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTGGCAT 506808 Query 46386 TGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTC 46445 ||| ||||||| |||| | ||| |||||| || ||||| || |||||||| || Sbjct 506807 CGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCAAGCT 506748 Query 46446 AATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACCAGC-CG 46503 |||||| | |||||||||||||| || ||||| ||||| || ||| || | | | Sbjct 506747 GATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAGT--TGCTCTCGGTAACTCC 506690 Query 46504 AAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAA 46563 ||| | | || | ||| || || || || ||| | |||||||| |||| ||||| Sbjct 506689 AAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCAAG 506630 Query 46564 ACTAATTTTTTCGAAAAGCGCGT 46586 || || |||||||| ||||| || Sbjct 506629 ACCAACTTTTTCGAGAAGCGAGT 506607 >seq6 Length=3777980 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | || |||||||| || |||||||| || Sbjct 1363901 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1363842 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| |||||||| || ||| |||| | |||||||||||||| || Sbjct 1363841 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1363782 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 1363781 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1363722 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || |||||||| || || || || ||||||||||| Sbjct 1363721 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1363675 Score = 102 bits (112), Expect = 8e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || | ||| | || |||||||| || |||||||| ||| | || || | Sbjct 1245198 CGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCG 1245139 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || ||| |||| | |||||||||||||| |||||||| || ||| Sbjct 1245138 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTG 1245079 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | || || | |||||| | |||| ||| | Sbjct 1245078 TCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATA 1245019 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA 131233 || || || || || || || || || || |||| Sbjct 1245018 GTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1244985 >seq5 Length=4047401 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | || |||||||| ||||||||||| || | Sbjct 2184061 CCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAC 2184002 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| | || | ||||||||||||||||| Sbjct 2184001 AGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGA 2183942 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||||| || ||||| || || ||||| | || | || |||| |||||||| Sbjct 2183941 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGA 2183884 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || || | || | |||||||||||||| || ||||| || ||| Sbjct 2184217 TCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 2184158 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || || || ||||| | || | ||| || | ||||| | |||| || | | Sbjct 2184157 TCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTGATG 2184098 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| || |||||||||||||| Sbjct 2184097 GTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012628895360