Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 159 4e-34 seq6 158 2e-33 seq4 105 8e-18 >seq2 Length=3052417 Score = 159 bits (176), Expect = 4e-34 Identities = 383/574 (67%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 ||| ||||||||||||| || | |||||||| || ||||| || ||||| || || Sbjct 506897 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 506956 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794 ||||| || ||||| || ||||| || || || || || ||||| || || || || || Sbjct 506957 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 507016 Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCT--GTCATGTATCCACTTTTGAGC 32851 ||||||||||| |||| ||||||| | || | || ||| |||||||| | || Sbjct 507017 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 507076 Query 32852 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 32911 ||| |||||||| || || | || || || ||||| || || || || || ||| || Sbjct 507077 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 507136 Query 32912 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 32971 || || || || | ||||| || |||| || || | || || || ||||| Sbjct 507137 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 507196 Query 32972 TTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACA 33031 || || || || || ||||||||||| | ||||||| ||| || || | Sbjct 507197 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 507256 Query 33032 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33091 ||||| || | | || || || || || ||||| ||| ||||| || || | || Sbjct 507257 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 507316 Query 33092 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT---TTATTCCAATCATTGATATCTT 33147 || || || | || || | |||| ||| || | ||| ||| || || | Sbjct 507317 GTGGGAGATGAAGAACCGCTCATC-GTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT 507375 Query 33148 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 33207 | | ||| | || || ||||||| || || ||||| ||||| || ||||| | || Sbjct 507376 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 507435 Query 33208 AGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 |||| || || || || || || || | ||||| Sbjct 507436 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 507469 >seq6 Length=3777980 Score = 158 bits (174), Expect = 2e-33 Identities = 456/699 (65%), Gaps = 2/699 (0%) Strand=Plus/Minus Query 62996 AACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCAC 63055 ||||| || || | || | ||| || || || || || | || ||||||| | ||| Sbjct 3775708 AACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCAT 3775649 Query 63056 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 63115 || ||| | || ||||| | ||| || || || || ||||| ||||| | || || Sbjct 3775648 TCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAGG 3775589 Query 63116 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 63175 |||| || || | || || ||||| |||||| || ||| |||| | | ||| Sbjct 3775588 TCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATA 3775529 Query 63176 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 63235 || ||||| || || | ||| || || | | ||||| || ||||| ||||||||| Sbjct 3775528 TCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTGA 3775469 Query 63236 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 63295 || | ||||| |||||||| ||||| || | || ||| || | ||||| ||||| || Sbjct 3775468 TCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGTT 3775409 Query 63296 CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATT 63355 || || || || | || ||| ||| | || || || || || || ||||| || Sbjct 3775408 CCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGATA 3775349 Query 63356 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 63415 || || || || || || | || || ||| | ||||| |||||||| || || Sbjct 3775348 CCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGATG 3775289 Query 63416 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63475 || ||| ||||||| | || ||||| ||||| || | | |||||| || Sbjct 3775288 GAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGCG 3775229 Query 63476 TTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTC 63534 || | | || || ||||||||||| || | || | ||| | ||| ||||| ||||| Sbjct 3775228 TTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAG-TTGTAGGTCTC 3775170 Query 63535 AATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 63594 ||| || | | || | || || || || | ||| ||||| | ||| || || Sbjct 3775169 AATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATCTGTTG 3775110 Query 63595 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 63654 |||| || | | ||| | | || || ||| | | |||| || || || Sbjct 3775109 GGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGGGTCTTGAA 3775050 Query 63655 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| |||||||| | |||||||| ||||| | ||| Sbjct 3775049 GCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 3775011 >seq4 Length=3654803 Score = 105 bits (116), Expect = 8e-18 Identities = 462/713 (65%), Gaps = 30/713 (4%) Strand=Plus/Plus Query 62990 CGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGA-CATTCATCCGGACACATCAA 63048 || ||||| || ||||||||||||| | |||| || || | || | ||||| | | Sbjct 397955 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTCTG-GGACAGAAAAG 398013 Query 63049 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108 ||||||| | || ||| || ||| |||||| || ||||| | ||| | || Sbjct 398014 AGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGTA 398073 Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAA 63165 || || || | || || || ||||||| || || ||||| |||| ||||| Sbjct 398074 GAAGAGGTCACGGGCTCGATTTTCCTCGGCACC---ATGGTTTTTGCGCAGATTCAGGAA 398130 Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225 ||| ||| || | |||||| || ||||| || | || | |||| || |||||||| Sbjct 398131 ATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTT 398190 Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| || || | ||| | ||| ||||| || | ||||| | ||| |||| || || Sbjct 398191 TCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCC 398250 Query 63286 ATTGGATGTACCATTGGTCCCTGAGAT-ATAGCTTCCACTGGCACGAATATTACTAAT-T 63343 |||| | || | | ||| | || | ||| ||| |||| | ||| || || | Sbjct 398251 GGAGGATCTTCCTTGAGACCCAGTAATGAGAGC-TCCCTTGGCTCTAATGTTGTGGATAT 398309 Query 63344 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATA 63402 | || || || || || || |||| |||||| || || |||||| | ||| || || Sbjct 398310 GCAAG-CCGATACCTCCGGCGGTTTTGGAGATTTGGGCACA-CGTTTTGAGCGTGTCGTA 398367 Query 63403 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63462 |||||| || || || | |||| | || |||||| || | |||| | Sbjct 398368 GATGCCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTG 398427 Query 63463 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAG-TA 63521 ||||| ||||| || || |||||||| || || || || ||||| || | | Sbjct 398428 GGGGGTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA----TTTTCTGAGCGACA 398483 Query 63522 GA---TTGTACGTCTCAATAGC--TGAGTCTAT-ATC-CCATTGATGAATTCCTACTGCG 63574 || | ||| || || | ||| ||| ||| |||| |||| || | || Sbjct 398484 GAGCCTGGTAGGTTTCGCGCACCTTGAAAATATCATCTCCATGGATG----CCCAGGGCC 398539 Query 63575 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63634 || ||||| ||||| || ||||||| || || | || | | | |||| ||||| Sbjct 398540 ACTCGCATCAACATATGTTGAGGTCGCTCCACCACGTTTCCGCCAACTCTCAATAAGTAT 398599 Query 63635 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63687 || || |||| || || || ||||| ||| ||| | | |||||| | ||| Sbjct 398600 GACTTCTCCAGGGTCTTGAATCCAAAGTAGGAGTAAGTCATGTCTCGGTAGTA 398652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631770308400