Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq2 159 4e-34
seq6 158 2e-33
seq4 105 8e-18
>seq2
Length=3052417
Score = 159 bits (176), Expect = 4e-34
Identities = 383/574 (67%), Gaps = 8/574 (1%)
Strand=Plus/Plus
Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734
||| ||||||||||||| || | |||||||| || ||||| || ||||| || ||
Sbjct 506897 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 506956
Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794
||||| || ||||| || ||||| || || || || || ||||| || || || || ||
Sbjct 506957 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 507016
Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCT--GTCATGTATCCACTTTTGAGC 32851
||||||||||| |||| ||||||| | || | || ||| |||||||| | ||
Sbjct 507017 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 507076
Query 32852 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 32911
||| |||||||| || || | || || || ||||| || || || || || ||| ||
Sbjct 507077 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 507136
Query 32912 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 32971
|| || || || | ||||| || |||| || || | || || || |||||
Sbjct 507137 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 507196
Query 32972 TTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACA 33031
|| || || || || ||||||||||| | ||||||| ||| || || |
Sbjct 507197 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 507256
Query 33032 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33091
||||| || | | || || || || || ||||| ||| ||||| || || | ||
Sbjct 507257 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 507316
Query 33092 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT---TTATTCCAATCATTGATATCTT 33147
|| || || | || || | |||| ||| || | ||| ||| || || |
Sbjct 507317 GTGGGAGATGAAGAACCGCTCATC-GTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT 507375
Query 33148 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 33207
| | ||| | || || ||||||| || || ||||| ||||| || ||||| | ||
Sbjct 507376 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 507435
Query 33208 AGATGTCATGATATTGAATTGGAAAAATAACAAA 33241
|||| || || || || || || || | |||||
Sbjct 507436 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 507469
>seq6
Length=3777980
Score = 158 bits (174), Expect = 2e-33
Identities = 456/699 (65%), Gaps = 2/699 (0%)
Strand=Plus/Minus
Query 62996 AACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCAC 63055
||||| || || | || | ||| || || || || || | || ||||||| | |||
Sbjct 3775708 AACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCAT 3775649
Query 63056 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 63115
|| ||| | || ||||| | ||| || || || || ||||| ||||| | || ||
Sbjct 3775648 TCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAGG 3775589
Query 63116 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 63175
|||| || || | || || ||||| |||||| || ||| |||| | | |||
Sbjct 3775588 TCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATA 3775529
Query 63176 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 63235
|| ||||| || || | ||| || || | | ||||| || ||||| |||||||||
Sbjct 3775528 TCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTGA 3775469
Query 63236 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 63295
|| | ||||| |||||||| ||||| || | || ||| || | ||||| ||||| ||
Sbjct 3775468 TCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGTT 3775409
Query 63296 CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATT 63355
|| || || || | || ||| ||| | || || || || || || ||||| ||
Sbjct 3775408 CCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGATA 3775349
Query 63356 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 63415
|| || || || || || | || || ||| | ||||| |||||||| || ||
Sbjct 3775348 CCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGATG 3775289
Query 63416 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63475
|| ||| ||||||| | || ||||| ||||| || | | |||||| ||
Sbjct 3775288 GAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGCG 3775229
Query 63476 TTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTC 63534
|| | | || || ||||||||||| || | || | ||| | ||| ||||| |||||
Sbjct 3775228 TTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAG-TTGTAGGTCTC 3775170
Query 63535 AATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 63594
||| || | | || | || || || || | ||| ||||| | ||| || ||
Sbjct 3775169 AATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATCTGTTG 3775110
Query 63595 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 63654
|||| || | | ||| | | || || ||| | | |||| || || ||
Sbjct 3775109 GGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGGGTCTTGAA 3775050
Query 63655 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
||||| |||||||| | |||||||| ||||| | |||
Sbjct 3775049 GCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 3775011
>seq4
Length=3654803
Score = 105 bits (116), Expect = 8e-18
Identities = 462/713 (65%), Gaps = 30/713 (4%)
Strand=Plus/Plus
Query 62990 CGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGA-CATTCATCCGGACACATCAA 63048
|| ||||| || ||||||||||||| | |||| || || | || | ||||| | |
Sbjct 397955 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTCTG-GGACAGAAAAG 398013
Query 63049 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108
||||||| | || ||| || ||| |||||| || ||||| | ||| | ||
Sbjct 398014 AGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGTA 398073
Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAA 63165
|| || || | || || || ||||||| || || ||||| |||| |||||
Sbjct 398074 GAAGAGGTCACGGGCTCGATTTTCCTCGGCACC---ATGGTTTTTGCGCAGATTCAGGAA 398130
Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225
||| ||| || | |||||| || ||||| || | || | |||| || ||||||||
Sbjct 398131 ATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTT 398190
Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285
|||||| || || | ||| | ||| ||||| || | ||||| | ||| |||| || ||
Sbjct 398191 TCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCC 398250
Query 63286 ATTGGATGTACCATTGGTCCCTGAGAT-ATAGCTTCCACTGGCACGAATATTACTAAT-T 63343
|||| | || | | ||| | || | ||| ||| |||| | ||| || || |
Sbjct 398251 GGAGGATCTTCCTTGAGACCCAGTAATGAGAGC-TCCCTTGGCTCTAATGTTGTGGATAT 398309
Query 63344 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATA 63402
| || || || || || || |||| |||||| || || |||||| | ||| || ||
Sbjct 398310 GCAAG-CCGATACCTCCGGCGGTTTTGGAGATTTGGGCACA-CGTTTTGAGCGTGTCGTA 398367
Query 63403 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63462
|||||| || || || | |||| | || |||||| || | |||| |
Sbjct 398368 GATGCCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTG 398427
Query 63463 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAG-TA 63521
||||| ||||| || || |||||||| || || || || ||||| || | |
Sbjct 398428 GGGGGTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA----TTTTCTGAGCGACA 398483
Query 63522 GA---TTGTACGTCTCAATAGC--TGAGTCTAT-ATC-CCATTGATGAATTCCTACTGCG 63574
|| | ||| || || | ||| ||| ||| |||| |||| || | ||
Sbjct 398484 GAGCCTGGTAGGTTTCGCGCACCTTGAAAATATCATCTCCATGGATG----CCCAGGGCC 398539
Query 63575 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63634
|| ||||| ||||| || ||||||| || || | || | | | |||| |||||
Sbjct 398540 ACTCGCATCAACATATGTTGAGGTCGCTCCACCACGTTTCCGCCAACTCTCAATAAGTAT 398599
Query 63635 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63687
|| || |||| || || || ||||| ||| ||| | | |||||| | |||
Sbjct 398600 GACTTCTCCAGGGTCTTGAATCCAAAGTAGGAGTAAGTCATGTCTCGGTAGTA 398652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631770308400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |