Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 172 6e-38 >seq2 Length=3052417 Score = 172 bits (190), Expect = 6e-38 Identities = 413/621 (67%), Gaps = 9/621 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| |||||||| || || | ||| |||||||| || || | ||| ||| ||| || | Sbjct 506882 GCAGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAG 506941 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || ||||| ||||||||||| || || || || ||| || || || || Sbjct 506942 GCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAA 507001 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT-TAC--T 93267 || || || ||||| ||||| || | | || || |||| | ||| | | | Sbjct 507002 GATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAA---GGTGGACTCTTCGTC 507058 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 | |||||| || | ||||| ||||| |||||||| || || || | || ||||| || Sbjct 507059 GGAGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGC 507118 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 ||| || ||||| |||||| | | || |||||||| ||||| | ||| || || Sbjct 507119 GTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTA 507178 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 | || || |||| |||||||| || ||||| |||||||| || | || || | Sbjct 507179 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGG 507238 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 | |||||| || || |||| ||| || || || || || || ||||| ||||| || Sbjct 507239 GGCCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGC 507298 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATC 93564 ||||| || || | | || || || |||||| | || || || || Sbjct 507299 AGCAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTGTTCTC 507358 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| || | || ||| |||||| | || || | ||||| || || || || || Sbjct 507359 CCAGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGC 507418 Query 93625 TTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGG 93684 || |||||||| | ||| || || || || || || || || | ||||| || | | Sbjct 507419 CTTCTTGTACATCTGCCAGATTTCGTGGTACTGGATGGGGAAGAGCACAAACCGTCGATG 507478 Query 93685 GTTATCTTTTAGTAACGGCTC 93705 ||| || || || | ||||| Sbjct 507479 GTTCTCCTTGAGCAGAGGCTC 507499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860598137960