Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 118 9e-22 seq5 96.9 3e-15 >seq6 Length=3777980 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | |||||||| || |||| || || ||||| | || Sbjct 1363675 ATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTCC 1363734 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| ||||| || || || Sbjct 1363735 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 1363794 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || ||||| || ||| | ||||| ||| ||| | || || |||||| Sbjct 1363795 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAAC 1363854 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | ||| | || ||||| | || || ||| Sbjct 1363855 ATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCGACTTCGAGGTGGT 1363902 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 ||||||| ||||| || || | || || || || |||| || || ||||| || | | Sbjct 1244985 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1245044 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | ||| | ||| | |||| || || || ||||||||||| || || || || || | Sbjct 1245045 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGC 1245104 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | || ||||| || ||||| || ||| | ||||| ||| || | ||||| ||||||| Sbjct 1245105 AGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAACA 1245164 Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | || || || ||||| | ||| | ||| ||||| | || |||||| Sbjct 1245165 TCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGAGGT 1245211 >seq5 Length=4047401 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 || |||| ||| | ||| | |||| || ||||| ||||||||||| ||||| || | Sbjct 2183890 CCTCCGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGG 2183949 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 | || || || || || || ||||| || ||| | |||||| ||| ||| | || || | Sbjct 2183950 ACCAGCAGCGACTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACT 2184009 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||| || || ||||| | ||| | ||| | ||| | || || ||| Sbjct 2184010 ACAACATTCAGAAGGAGTCCACTCTCCATCTCGTTCTCCGACTCCGAGGTGGT 2184062 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || || || || || || || ||||| || || Sbjct 2184321 AAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTGATTTTTGCTGGTAAG 2184380 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||| || | ||||| |||||||| || || || ||||| | ||| Sbjct 2184381 CAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAT 2184440 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | ||| | ||| | || || || Sbjct 2184441 CTCGTTCTTCGACTCCGAGGTGG 2184463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727851652385