Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 9e-22
seq5 96.9 3e-15
>seq6
Length=3777980
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| || || | |||||||| || |||| || || ||||| | ||
Sbjct 1363675 ATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTCC 1363734
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || || || ||||||||||| ||||| || || ||
Sbjct 1363735 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 1363794
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || ||||| || ||||| || ||| | ||||| ||| ||| | || || ||||||
Sbjct 1363795 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAAC 1363854
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || ||||| | ||| | || ||||| | || || |||
Sbjct 1363855 ATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCGACTTCGAGGTGGT 1363902
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279
||||||| ||||| || || | || || || || |||| || || ||||| || | |
Sbjct 1244985 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1245044
Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339
| ||| | ||| | |||| || || || ||||||||||| || || || || || |
Sbjct 1245045 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGC 1245104
Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399
| || ||||| || ||||| || ||| | ||||| ||| || | ||||| |||||||
Sbjct 1245105 AGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAACA 1245164
Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
| || || || ||||| | ||| | ||| ||||| | || ||||||
Sbjct 1245165 TCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGAGGT 1245211
>seq5
Length=4047401
Score = 96.9 bits (106), Expect = 3e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333
|| |||| ||| | ||| | |||| || ||||| ||||||||||| ||||| || |
Sbjct 2183890 CCTCCGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGG 2183949
Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393
| || || || || || || ||||| || ||| | |||||| ||| ||| | || || |
Sbjct 2183950 ACCAGCAGCGACTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACT 2184009
Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||||||| || || ||||| | ||| | ||| | ||| | || || |||
Sbjct 2184010 ACAACATTCAGAAGGAGTCCACTCTCCATCTCGTTCTCCGACTCCGAGGTGGT 2184062
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| ||||| || || || || || || || ||||| || ||
Sbjct 2184321 AAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTGATTTTTGCTGGTAAG 2184380
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | |||||| ||| || | ||||| |||||||| || || || ||||| | |||
Sbjct 2184381 CAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAT 2184440
Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445
| ||| | ||| | || || ||
Sbjct 2184441 CTCGTTCTTCGACTCCGAGGTGG 2184463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727851652385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |